
A superhelix is a
molecular
A molecule is a group of two or more atoms that are held together by attractive forces known as chemical bonds; depending on context, the term may or may not include ions that satisfy this criterion. In quantum physics, organic chemistry, ...
structure in which a
helix
A helix (; ) is a shape like a cylindrical coil spring or the thread of a machine screw. It is a type of smooth space curve with tangent lines at a constant angle to a fixed axis. Helices are important in biology, as the DNA molecule is for ...
is itself coiled into a helix. This is significant to both
protein
Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residue (biochemistry), residues. Proteins perform a vast array of functions within organisms, including Enzyme catalysis, catalysing metab ...
s and
gene
In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protei ...
tic material, such as overwound circular
DNA
Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
.
The earliest significant reference in
molecular biology
Molecular biology is a branch of biology that seeks to understand the molecule, molecular basis of biological activity in and between Cell (biology), cells, including biomolecule, biomolecular synthesis, modification, mechanisms, and interactio ...
is from 1971, by F. B. Fuller:
A geometric invariant of a space curve
In mathematics, a curve (also called a curved line in older texts) is an object similar to a line, but that does not have to be straight.
Intuitively, a curve may be thought of as the trace left by a moving point. This is the definition that ...
, the writhing number, is defined and studied. For the central curve of a twisted cord the writhing number measures the extent to which coiling of the central curve has relieved local twisting of the cord. This study originated in response to questions that arise in the study of supercoiled double-stranded DNA rings.
About the writhing number, mathematician
W. F. Pohl says:
It is well known that the writhing number is a standard measure of the global geometry of a closed space curve.
Contrary to intuition, a
topological
Topology (from the Greek words , and ) is the branch of mathematics concerned with the properties of a geometric object that are preserved under continuous deformations, such as stretching, twisting, crumpling, and bending; that is, wit ...
property, the
linking number, arises from the
geometric
Geometry (; ) is a branch of mathematics concerned with properties of space such as the distance, shape, size, and relative position of figures. Geometry is, along with arithmetic, one of the oldest branches of mathematics. A mathematician w ...
properties twist and writhe according to the following relationship:
:''L''
''k''= ''T'' + ''W'',
where ''L''
''k'' is the linking number, ''W'' is the
writhe and ''T'' is the
twist of the coil.
The linking number refers to the number of times that one strand wraps around the other. In DNA this property does not change and can only be modified by specialized enzymes called
topoisomerase
DNA topoisomerases (or topoisomerases) are enzymes that catalyze changes in the topological state of DNA, interconverting relaxed and supercoiled forms, linked (catenated) and unlinked species, and knotted and unknotted DNA. Topological issues in ...
s.
See also
*
DNA supercoil (superhelical DNA)
*
Coiled coil
*
Knot theory
In topology, knot theory is the study of knot (mathematics), mathematical knots. While inspired by knots which appear in daily life, such as those in shoelaces and rope, a mathematical knot differs in that the ends are joined so it cannot be und ...
References
External links
*
*
*
DNA Structure and Topologyat Molecular Biochemistry II: The Bello Lectures.
{{Spirals
Helices
Molecular biology
Molecular topology