''Streptomyces antibioticus'' (previously known as ''Actinomyces antibioticus'') is a
gram-positive
In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall.
The Gram stain is ...
bacterium
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the ...
discovered in 1941 by Nobel-prize-winner
Selman Waksman
Selman Abraham Waksman (July 22, 1888 – August 16, 1973) was a Russian-born American inventor, biochemist and microbiologist, whose research into the decomposition of organisms that live in soil enabled the discovery of streptomycin and severa ...
and
H. Boyd Woodruff.
Its name is derived from the Greek ''"strepto-"'' meaning "twisted", alluding to this
genus
Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
' chain-like
spore
In biology, a spore is a unit of sexual reproduction, sexual (in fungi) or asexual reproduction that may be adapted for biological dispersal, dispersal and for survival, often for extended periods of time, in unfavourable conditions. Spores fo ...
production,
and "''antibioticus''", referring to this species' extensive
antibiotic
An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting pathogenic bacteria, bacterial infections, and antibiotic medications are widely used in the therapy ...
production.
Upon its first characterization, it was noted that ''S. antibioticus'' produces a distinct soil odor.
Discovery
''Streptomyces antibioticus'' was discovered by Selman Waksman and H. Boyd Woodruff, who named the bacterium ''Actinomyces antibioticus.''
In their 1941 publication, Waksman and Woodruff describe their use of the "bacterial-agar plate method", in which they mixed a suspension of ''
E. coli
''Escherichia coli'' ( )Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. is a gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus ''Escherichia'' that is commonly foun ...
'' with washed
agar
Agar ( or ), or agar-agar, is a jelly-like substance consisting of polysaccharides obtained from the cell walls of some species of red algae, primarily from " ogonori" and " tengusa". As found in nature, agar is a mixture of two components, t ...
containing 1.5%
NaCl
Sodium chloride , commonly known as edible salt, is an ionic compound with the chemical formula NaCl, representing a 1:1 ratio of sodium and chloride ions. It is transparent or translucent, brittle, hygroscopic, and occurs as the mineral hali ...
and 0.5%
K3PO4. To this blend, they added "fresh field or garden soil" that was diluted with sterile tap water, and plated their final mixture.
They concluded that "bacterial antagonists", that is,
antibiotic
An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting pathogenic bacteria, bacterial infections, and antibiotic medications are widely used in the therapy ...
producing organisms, would produce clear patches in the agar.
Through this method they isolated and characterized ''Actinomyces antibioticus''.
Two years later, Waksman renamed the organism ''Streptomyces antibioticus.''
Characteristics
Phylogeny
''Streptomyces'' ''antibioticus'' belongs to the family
Streptomycetacae,
which contains two other genera: ''
Micromonospora
''Micromonospora'' is a genus of bacteria of the family Micromonosporaceae. The genus name was first proposed in 1923 by Danish physician Jeppe Ørskov in an attempt to classify what at the time was considered "ray fungi" based on morphology. M ...
''
and ''
Kitasatospora
''Kitasatospora'' is an Actinobacteria genus in the family Streptomycetaceae. The genus name comes from Shibasaburo Kitasato, a Japanese bacteriologist.
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with St ...
''.
16S rRNA
16S ribosomal RNA (or 16Svedberg, S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure.
The genes coding for it are referred to as ...
gene-based
phylogeny
A phylogenetic tree or phylogeny is a graphical representation which shows the evolutionary history between a set of species or Taxon, taxa during a specific time.Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, M ...
shows that within the ''
Streptomyces
''Streptomyces'', from στρεπτός (''streptós''), meaning "twisted", and μύκης (''múkés''), meaning "fungus", is the largest genus of Actinomycetota, and the type genus of the family Streptomycetaceae. Over 700 species of ''St ...
'' clade, the species ''S. antibioticus'' is more closely related to ''
Streptomyces griseorubor'' than to any other ''Streptomyces'' species''.''
One study showed that these two species form a late-diverging
clade
In biology, a clade (), also known as a Monophyly, monophyletic group or natural group, is a group of organisms that is composed of a common ancestor and all of its descendants. Clades are the fundamental unit of cladistics, a modern approach t ...
within the phylogenetic tree of the genus ''Streptomyces.''
Genomics
The
NCBI
The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is loca ...
's
GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a par ...
contains thousands of DNA sequences for ''S. antibioticus'' genes, partial genome sequences, and three complete genome sequences.
The currently available ''S. antibioticus'' genomes range in size from 8 to 10 million basepairs.
As with other members of the
Actinomycetes
The Actinomycetales is an Scientific classification, order of Actinomycetota. A member of the order is often called an actinomycete. Actinomycetales are generally Gram-positive bacteria, gram-positive and anaerobic and have mycelia in a filamento ...
, the ''S. antibioticus'' genome is known to have a high GC content (>55%).
Physiology and ecology
''Streptomyces'' species produce
differentiated, branch-like structures known as
hypha
A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium.
Structure
A hypha consists of one o ...
e, which collectively make up the organism's
mycelium
Mycelium (: mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Its normal form is that of branched, slender, entangled, anastomosing, hyaline threads. Fungal colonies composed of mycelium are fo ...
(plural mycelia).
For ''Streptomyces antibioticus'', as with other ''Streptomyces'' species, mycelia can be divided into two types: aerial and substrate.
The substrate mycelium is formed for vegetative growth, whereas the aerial mycelium is formed for the purpose of spore production.
Aerial hyphae branch out from the substrate mycelium and subsequently differentiate into chains of spores.
''Streptomyces antibioticus'' is known to be an
aerobic microorganism that resides in soil communities.
''S. antibioticus'' has been demonstrated to grow in temperatures ranging from 28–37 °C.
As an Actinomycete, this microbe is inferred to behave as a
mesophile
A mesophile is an organism that grows best in moderate temperature, neither too hot nor too cold, with an optimum growth range from . The optimum growth temperature for these organisms is 37 °C (about 99 °F). The term is mainly applied ...
in laboratory settings, having an
optimum growth temperature between 25–30 °C.
As a member of the genus ''Streptomyces'', ''S. antibioticus'' is inferred to live off of organic matter in the soil, and possess the ability to degrade large polymers such as
chitin
Chitin (carbon, C8hydrogen, H13oxygen, O5nitrogen, N)n ( ) is a long-chain polymer of N-Acetylglucosamine, ''N''-acetylglucosamine, an amide derivative of glucose. Chitin is the second most abundant polysaccharide in nature (behind only cell ...
and
keratin
Keratin () is one of a family of structural fibrous proteins also known as ''scleroproteins''. It is the key structural material making up Scale (anatomy), scales, hair, Nail (anatomy), nails, feathers, horn (anatomy), horns, claws, Hoof, hoove ...
.
''S. antibioticus'' has been shown to grow on several types of media, including
gelatin
Gelatin or gelatine () is a translucent, colorless, flavorless food ingredient, commonly derived from collagen taken from animal body parts. It is brittle when dry and rubbery when moist. It may also be referred to as hydrolyzed collagen, coll ...
,
Litmus milk,
Czapek's agar, and Peptone media.
Medical relevance
Antibiotics
A unique trait of ''Streptomyces antibioticus'' is its ability to produce several antibiotics of different classes.
Upon its discovery, it was found that ''S. antibioticus'' produced a then novel substance named
Actinomycin.
This substance was then separated into two compounds: Actinomycin A and Actinomycin B.
Actinomycin A was found to be highly
bacteriostatic
A bacteriostatic agent or bacteriostat, abbreviated Bstatic, is a biological or chemical agent that stops bacteria from reproducing, while not necessarily killing them otherwise. Depending on their application, bacteriostatic antibiotics, disinfec ...
(bacteria hindering) against all bacteria it was tested with.
Actinomycin B displayed little bacteriostatic activity but was shown to be highly
bactericidal
A bactericide or bacteriocide, sometimes abbreviated Bcidal, is a substance which kills bacteria. Bactericides are disinfectants, antiseptics, or antibiotics.
However, material surfaces can also have bactericidal properties based solely on their p ...
(bacteria killing), particularly towards gram-positive bacteria.
Actinomycin is also known to display
antifungal
An antifungal medication, also known as an antimycotic medication, is a pharmaceutical fungicide or fungistatic used to treat and prevent mycosis such as athlete's foot, ringworm, candidiasis (thrush), serious systemic infections such as ...
properties.
The antibiotic
Boromycin is also produced by ''S. antibioticus''.
This compound was first isolated from a ''S. antibioticus'' strain found in an African soil sample.
Boromycin is active against gram-positive bacteria, but inactive against
gram-negative
Gram-negative bacteria are bacteria that, unlike gram-positive bacteria, do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. Their defining characteristic is that their cell envelope consists ...
bacteria.
Boromycin has also been shown to have antifungal and
antiprotozoal properties.
Certain ''Streptomyces antibioticus'' strains produce antibiotics that have yet to be named and thoroughly characterized, such as the one mentioned in a 1998 study from
Calcutta University
The University of Calcutta, informally known as Calcutta University (), is a Public university, public State university (India), state university located in Kolkata, Calcutta (Kolkata), West Bengal, India. It has 151 affiliated undergraduate c ...
.
The antibiotic described was found to show antimicrobial activity against gram-negative bacteria, gram-positive bacteria, and
pathogenic fungi.
In addition to producing antibiotics, one strain of ''S. antibioticus'' has been discovered to induce a different species of ''Streptomyces'' to produce antibiotics.
Research done by Li et al. from
Osaka University
The , abbreviated as UOsaka or , is a List of national universities in Japan, national research university in Osaka, Japan. The university traces its roots back to Edo period, Edo-era institutions Tekijuku (1838) and Kaitokudō, Kaitokudo (1724), ...
studied a strain of ''S. antibioticus'' that produced a molecule with the ability to induce the organism ''
Streptomyces virginiae'' to produce the antibiotic
Virginiamycin.
Presently,
bacterial diseases
Pathogenic bacteria are bacteria that can cause disease. This article focuses on the bacteria that are pathogenic to humans. Most species of bacteria are harmless and many are beneficial but others can cause infectious diseases. The number of th ...
persist as a substantial cause of death worldwide.
To further exacerbate this issue, the discovery
antibiotic-resistant strains of bacteria is steadily increasing, a problem that raises the demand for novel antibiotics.
Currently, over two thirds of the antibiotics clinically prescribed have been produced by species within the genus ''Streptomyces''.
With the recent availability of whole genome sequences, ''Streptomyces'' species known for producing antibiotics are being studied for potential new antibiotics that may be present in their genomes, but not yet characterized.
Nucleoside analogs
The strain NRRL 3238 produces the anticancer drug
pentostatin and the antiviral (mainly herpes) drug
vidarabine.
References
{{Taxonbar, from=Q22286909
antibioticus
Bacteria described in 1943