Streptobacillus Moniliformis
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''Streptobacillus moniliformis'' is a non-motile,
Gram-negative Gram-negative bacteria are bacteria that, unlike gram-positive bacteria, do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. Their defining characteristic is that their cell envelope consists ...
rod-shaped
bacterium Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the ...
that is a member of the family Leptotrichiaceae. The
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
of ''S. moniliformis'' is one of two completed sequences of the order Fusobacteriales.


Etymology

Its genus name comes from the Ancient Greek word στρεπτός : ''streptós'' for "curved" or "twisted", and the Latin word ''
bacillus ''Bacillus'', from Latin "bacillus", meaning "little staff, wand", is a genus of Gram-positive, rod-shaped bacteria, a member of the phylum ''Bacillota'', with 266 named species. The term is also used to describe the shape (rod) of other so-sh ...
'' meaning "small rod." The specific name ''moniliformis'' means "necklace like". ''S. moniliformis'' is
microaerophilic A microaerophile is a microorganism that requires environments containing lower levels of dioxygen than that are present in the atmosphere (i.e. < 21% O2; typically 2–10% O2) for optimal growth. A more r ...
, requiring less
oxygen Oxygen is a chemical element; it has chemical symbol, symbol O and atomic number 8. It is a member of the chalcogen group (periodic table), group in the periodic table, a highly reactivity (chemistry), reactive nonmetal (chemistry), non ...
than is present in the
atmosphere An atmosphere () is a layer of gases that envelop an astronomical object, held in place by the gravity of the object. A planet retains an atmosphere when the gravity is great and the temperature of the atmosphere is low. A stellar atmosph ...
for its growth.


Background


History

''S. moniliformis'' was first isolated from a rat-bitten man in 1914 by German
microbiologist A microbiologist (from Greek ) is a scientist who studies microscopic life forms and processes. This includes study of the growth, interactions and characteristics of microscopic organisms such as bacteria, algae, fungi, and some types of par ...
H. Schottmüller, who described it as ''Streptothrix muris ratti''. In the United States during the year 1916, ''S. moniliformis'' was determined to be the causative source of rat-bite fever.


Microbiology

Some isolates of ''S. moniliformis'' have been collected from the upper
respiratory tract The respiratory tract is the subdivision of the respiratory system involved with the process of conducting air to the alveoli for the purposes of gas exchange in mammals. The respiratory tract is lined with respiratory epithelium as respirato ...
of domestic and wild
rats Rats are various medium-sized, long-tailed rodents. Species of rats are found throughout the order Rodentia, but stereotypical rats are found in the genus ''Rattus''. Other rat genera include ''Neotoma'' (pack rats), '' Bandicota'' (bandicoot ...
. Two known variants of ''S. moniliformis'' have been identified. The bacillary type is
pathogen In biology, a pathogen (, "suffering", "passion" and , "producer of"), in the oldest and broadest sense, is any organism or agent that can produce disease. A pathogen may also be referred to as an infectious agent, or simply a Germ theory of d ...
ic. In contrast, the spontaneously occurring L-form, which lacks a
cell wall A cell wall is a structural layer that surrounds some Cell type, cell types, found immediately outside the cell membrane. It can be tough, flexible, and sometimes rigid. Primarily, it provides the cell with structural support, shape, protection, ...
and whose
colonies A colony is a territory subject to a form of foreign rule, which rules the territory and its indigenous peoples separated from the foreign rulers, the colonizer, and their '' metropole'' (or "mother country"). This separated rule was often or ...
grow in a "fried egg" formation, is non-pathogenic.


Morphology

The bacterium ''S. moniliformis'' is a gram-negative pleomorphic rod occurring frequently in chains and tangled filaments with bulbous or ''Monilia''-like swellings. The organism presents phenotypically as being facultatively anaerobic, non-motile, weakly ferments glucose and maltose, is catalase and oxidase-negative, does not reduce nitrate, and exhibits no growth on MacConkey agar. Morphologically, colonies of ''S. moniliformis'' are 1–2 mm in size, smooth, convex, non-hemolytic (varied presentation with an α-hemolysis is not uncommon) and gray in color. When cultured in broth, a typical "puff-ball" appearance is seen.


Taxonomy

''Streptobacillus moniliformis'' was previously classified under the family Fusobacteriaceae. It was later regrouped with three other
genera Genus (; : genera ) is a taxonomic rank above species and below family as used in the biological classification of living and fossil organisms as well as viruses. In binomial nomenclature, the genus name forms the first part of the binomial s ...
: '' Sebaldella'', '' Sneathia'', and '' Leptotrichia''. These four genera were classified under the family Leptotrichiaceae following comparative analyses of the
16S ribosomal RNA 16S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome ( SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S ...
gene sequences and 16S-23S rDNA
internal transcribed spacer Internal transcribed spacer (ITS) is the spacer DNA situated between the small-subunit ribosomal RNA (rRNA) and large-subunit rRNA genes in the chromosome or the corresponding transcribed region in the polycistronic rRNA precursor transcript. ...
sequences among members of the phylum Fusobacteria. Identification of
conserved signature indels Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers ...
unique to Fusobacteria and its primary clades as well as phylogenetic analysis of members of Fusobacteria based on concatenated sequences of 17 conserved proteins further support the distinction between the two families. ''S. moniliformis'' was formerly classified as the only member of the genus ''Streptobacillus''. However, ''Streptobacillus'' strains HKU33T and HKU34 were isolated in Hong Kong in September 2014. ''Streptobacillus'' HKU33T was found in
pus Pus is an exudate, typically white-yellow, yellow, or yellow-brown, formed at the site of inflammation during infections, regardless of cause. An accumulation of pus in an enclosed tissue space is known as an abscess, whereas a visible collect ...
isolated from the
abscess An abscess is a collection of pus that has built up within the tissue of the body, usually caused by bacterial infection. Signs and symptoms of abscesses include redness, pain, warmth, and swelling. The swelling may feel fluid-filled when pre ...
of a 38-year-old patient with quinsy and HKU34 from the
elbow The elbow is the region between the upper arm and the forearm that surrounds the elbow joint. The elbow includes prominent landmarks such as the olecranon, the cubital fossa (also called the chelidon, or the elbow pit), and the lateral and t ...
joint fluid of a 64-year-old patient with
septic arthritis Acute septic arthritis, infectious arthritis, suppurative arthritis, pyogenic arthritis, osteomyelitis, or joint infection is the invasion of a joint by an infectious agent resulting in joint inflammation. Generally speaking, symptoms typica ...
. Following analysis of the 16S rRNA gene sequences found in members of Leptotrichiaceae and partial sequences of the ''rec''A, ''gro''El, and ''gyr''B genes present in both isolates, the two strains were taxonomically grouped under the novel
species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ...
''Streptobacillus hongkongensis'' sp. nov.


Genomics

The
U.S. Department of Energy The United States Department of Energy (DOE) is an executive department of the U.S. federal government that oversees U.S. national energy policy and energy production, the research and development of nuclear power, the military's nuclear we ...
's
Joint Genome Institute The Joint Genome Institute (JGI) is a scientific user facility for integrative genomic science at Lawrence Berkeley National Laboratory. The mission of the JGI is to advance genomics research in support of the United States Department of Energy ...
(DOE JGI) sequenced the complete genome of ''S. moniliformis'' DSM 12112. It is made up of one circular
chromosome A chromosome is a package of DNA containing part or all of the genetic material of an organism. In most chromosomes, the very long thin DNA fibers are coated with nucleosome-forming packaging proteins; in eukaryotic cells, the most import ...
of 1,673,280
base pair A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA ...
s as determined from a combination of Sanger and 454 sequencing. The mol% of
guanine Guanine () (symbol G or Gua) is one of the four main nucleotide bases found in the nucleic acids DNA and RNA, the others being adenine, cytosine, and thymine ( uracil in RNA). In DNA, guanine is paired with cytosine. The guanine nucleoside ...
and
cytosine Cytosine () (symbol C or Cyt) is one of the four nucleotide bases found in DNA and RNA, along with adenine, guanine, and thymine ( uracil in RNA). It is a pyrimidine derivative, with a heterocyclic aromatic ring and two substituents attac ...
in the
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
is 26.3% with 1,511 protein coding
gene In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protei ...
s out of the 1,566 genes predicted. These low G+C values were previously only seen in members of the order Mycoplasmatales, which includes the genus ''
Mycoplasma ''Mycoplasma'' is a genus of bacteria that, like the other members of the class ''Mollicutes'', lack a cell wall, and its peptidoglycan, around their cell membrane. The absence of peptidoglycan makes them naturally resistant to antibiotics ...
'', indicating a relationship between ''Mycoplasma'' and ''S. moniliformis''. However,
16S rRNA gene 16S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome (SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rRN ...
analysis showed this relation to be incorrect. ''S. moniliformis'' also has a single circular
plasmid A plasmid is a small, extrachromosomal DNA molecule within a cell that is physically separated from chromosomal DNA and can replicate independently. They are most commonly found as small circular, double-stranded DNA molecules in bacteria and ...
pSMON01 that is 10,702 base pairs long with 1,511 protein coding genes.


Isolation and identification

The fastidious nature of ''Streptobacillus moniliformis'' makes it difficult to culture, with current published recommendations stating it requires media supplemented with 20% serum, ascitic fluid, or whole blood in order to grow. Numerous published reports also state that the organism is inhibited by the polyanionic detergent sodium polyanethole sulfonate (SPS-trade name; Liquoid; Hoffman-La Roche, Inc., Nutley, N.J.), the main anticoagulant in modern commercially available blood culture bottles, used in automated continuous blood culture instruments. Optimizing the best chances for organism recovery should include the aseptic collection of blood or sterile body fluids into commercial blood culture bottles (documenting the amount of blood drawn from the patient, if applicable) during the acute phase of infection, and collected in duplicate with optimal volumes of inoculation for the isolation and growth of ''S. moniliformis'' being 10ml for adolescent to adult patients. In a pediatric population, 4–5ml should be extrapolated. Bottles should be incubated minimally for 7 days to ensure the best chance for organism recovery when working with low levels of bacteremia. If not yet detected by day 7, they should be blind sub-cultured to rule out a false-negative blood culture result. Automated continuous blood culturing instrumentation growth and fluorescent detection data should be checked manually during the course of incubation in order to rule out missed false-negative samples. Once a bottle shows signs of organism growth and detection, a Gram stain should be performed followed by inoculation of blood onto rabbit or sheep blood agar and brain heart infusion broth and incubated aerobically at 35 °C, 35–37 °C, or 5% enriched (microaerophilic) environment for a minimum of 3–4 days. While the organism has been reported to be inhibited by specific blood culture additives, specifically SPS in the clinical lab, current research has proposed methods to overcome this limitation with "100% culture, growth success rates". According to Szewc et al., their research into the "reported" fastidious nature of ''S. moniliformis'', and its inhibition by the anticoagulant SPS showed, that when using a specific volume of blood for inoculum, it resulted in 100% recovery and successful growth of this organism and appeared to overcome the inhibitions and limitations that historically have been observed when using SPS for blood culturing and recovering ''S. moniliformis'' in a clinical setting.


Relevance


Rat bite fever and Haverhill fever

In the U.S.,
rat bite fever Rat-bite fever (RBF) is an acute, febrile human illness caused by bacteria transmitted by rodents, in most cases, which is passed from rodent to human by the rodent's urine or mucous secretions. Alternative names for rat-bite fever include stre ...
is primarily caused by transmission of ''S. moniliformis'' from the bite of a rat. However, approximately 30% of patients diagnosed with rat bite fever do not recall being scratched or bitten by an infected animal. Transmission of the bacterium is also known to occur via consumption of infected water, close contact with, or handling of rats. Haverhill fever, named after the 1926 outbreak of the disease in
Haverhill, Massachusetts Haverhill ( ) is a city in Essex County, Massachusetts, United States. Haverhill is located north of Boston on the New Hampshire border and about from the Atlantic Ocean. The population was 67,787 at the 2020 United States census. Located o ...
, is a form of rat bite fever that can result from ingesting food contaminated with ''S. moniliformis''. In 1986 at a boarding school in the
United Kingdom The United Kingdom of Great Britain and Northern Ireland, commonly known as the United Kingdom (UK) or Britain, is a country in Northwestern Europe, off the coast of European mainland, the continental mainland. It comprises England, Scotlan ...
, another outbreak of Haverhill fever was reported. Some 304 people were reported to have been afflicted. Infection was suspected to have resulted from the consumption of either unpasteurized milk or water contaminated with rat feces. Infected individuals described symptoms including a sudden development of vomiting, severe headache, and cold sweats with a high fever. Parker and Hudson first isolated the cause of this outbreak, which they named ''Haverhilia multiformis''. This organism was later matched to ''S. moniliformis'' after further research. Symptoms of rate bite fever include the abrupt onset of fever ranging from 38 °C to 41 °C. Approximately 75% of infected individuals develop a rash in addition to
hemorrhaging Bleeding, hemorrhage, haemorrhage or blood loss, is blood escaping from the circulatory system from damaged blood vessels. Bleeding can occur internally, or externally either through a natural opening such as the mouth, nose, ear, urethra, ...
vesicles. Both the rash and vesicles are usually located on the hands and feet, although the rash has been known to spread to other parts of the body. The microaerophilic nature of ''S. moniliformis'' makes identification difficult. PCR testing is being utilized more for its identification. However, there is still a 13%
mortality rate Mortality rate, or death rate, is a measure of the number of deaths (in general, or due to a specific cause) in a particular Statistical population, population, scaled to the size of that population, per unit of time. Mortality rate is typically ...
for untreated cases.
Immunocompromised Immunodeficiency, also known as immunocompromise, is a state in which the immune system's ability to fight infectious diseases and cancer is compromised or entirely absent. Most cases are acquired ("secondary") due to extrinsic factors that affe ...
individuals, such as
HIV The human immunodeficiency viruses (HIV) are two species of '' Lentivirus'' (a subgroup of retrovirus) that infect humans. Over time, they cause acquired immunodeficiency syndrome (AIDS), a condition in which progressive failure of the im ...
-positive individuals, are more at risk of death from this disease. Lab personnel and pet store workers, who work closely with animals on a daily basis, also have an increased risk of infection. Although ''S. moniliformis'' is believed to be part of the
commensal Commensalism is a long-term biological interaction (symbiosis) in which members of one species gain benefits while those of the other species neither benefit nor are harmed. This is in contrast with mutualism, in which both organisms benefit f ...
bacteria of the respiratory tract of rats, rats have occasionally shown signs of the disease.
Antibiotics An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting pathogenic bacteria, bacterial infections, and antibiotic medications are widely used in the therapy ...
used to treat infection may cause the formation of the L-form, which persists in the body, although this form is not pathogenic.


References


External links


DOE Joint Genome Institute
''S. moniliformis'' Genome Portal
KEGG (Kyoto Encyclopedia of Genes and Genomes)
''S. moniliformis'' genome information
Phylogenetic neighborhood of ''S. moniliformis''Type strain of ''Streptobacillus moniliformis'' at Bac''Dive'' – the Bacterial Diversity Metadatabase
{{Authority control Fusobacteriota Pathogenic bacteria