''Schinkia'' is a genus of

Gram-positive In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. The Gram stain is ...

rod-shaped bacteria in the family ''

Bacillaceae Bacillaceae, from Latin "bacillus", meaning "little staff, wand", are a family of gram-positive, heterotrophic, rod-shaped bacteria that may produce endospores. Motile members of this family are characterized by peritrichous flagella. Some Baci ...

'' from the order ''

Bacillales Bacillales, from Latin "bacillus", meaning "little staff, wand", are an order (biology), order of Gram-positive bacteria, placed within the Bacillota. The ''Bacillales'' are the most productive order of the phylum ''Firmicutes''. Representative ...

.'' The type species of this genus is ''Schinkia azotoformans.'' Members of ''Schinkia'' are previously species belonging to ''

Bacillus ''Bacillus'', from Latin "bacillus", meaning "little staff, wand", is a genus of Gram-positive, rod-shaped bacteria, a member of the phylum ''Bacillota'', with 266 named species. The term is also used to describe the shape (rod) of other so-sh ...

'', a genus that has been recognized as displaying extensive

polyphyly A polyphyletic group is an assemblage that includes organisms with mixed evolutionary origin but does not include their most recent common ancestor. The term is often applied to groups that share similar features known as homoplasies, which ar ...

and phylogenetic heterogeneity due to the vague criteria (such as the ability to form endospores in the presence of oxygen) previously used to assign species to this clade. Multiple studies using comparative phylogenetic analyses have been published in an attempt to clarify the evolutionary relationships between ''Bacillus'' species, resulting in the establishment of numerous novel genera such as ''

Alkalihalobacillus ''Alkalihalobacillus'' is a genus of gram-positive or gram-variable rod-shaped bacteria in the family '' Bacillaceae'' from the order ''Bacillales''. The type species of this genus is '' Alkalihalobacillus alcalophilus.'' This genus comprises sp ...

'', ''

Brevibacillus ''Brevibacillus'' is a genus of Gram-positive bacteria in the family Brevibacillaceae. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnolo ...

'', '' Solibacillus'', ''

Alicyclobacillus ''Alicyclobacillus'' is a genus of Gram-variable, rod-shaped, spore-forming bacteria. The bacteria are able to grow in acidic conditions, while the spores are able to survive typical pasteurization procedures. Overview ''Alicyclobacilli'' are ...

'', '' Virgibacillus'', and

Evansella ''Evansella'' is a genus of Gram-positive bacteria, Gram-positive rod-shaped bacteria in the family ''Bacillaceae'' within the order ''Bacillales''. The type species for this genus is ''Evansella cellulosilytica.'' Members of ''Evansella'' was t ...

. In addition, the genus ''Bacillus'' has been restricted to only include species closely related to ''

Bacillus subtilis ''Bacillus subtilis'' (), known also as the hay bacillus or grass bacillus, is a gram-positive, catalase-positive bacterium, found in soil and the gastrointestinal tract of ruminants, humans and marine sponges. As a member of the genus ''Bacill ...

'' and ''

Bacillus cereus ''Bacillus cereus'' is a Gram-positive bacteria, Gram-positive Bacillus, rod-shaped bacterium commonly found in soil, food, and marine sponges. The specific name, ''cereus'', meaning "waxy" in Latin, refers to the appearance of colonies grown o ...

.'' The name ''Schinkia'' was named after German microbiologist Professor Bernard Schink, University of Konstanz, for his studies of diverse microorganisms and his contributions in the discipline of microbial taxonomy.

Biochemical characteristics and molecular signatures

Members of this genus are

aerobic Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cellu ...

facultatively anaerobic A facultative anaerobic organism is an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation if oxygen is absent. Some examples of facultatively anaerobic bacteria are ''Staphylococcus' ...

and found in soil. All members can produce endospores and are motile by means of peritrichous flagella. ''Schinkia'' can grow in temperatures ranging from 20°C to 46°C but the optimal growth temperature is in the range of 30-40°C. Members of this genus are industrially significant as ''Schinkia azotoformans'' is able to produce nitrogen () by co-denitrification, and ''Schinkia oryziterrae'' is a selenium nanoparticle-producing and nitrate-reducing bacterium. 13

conserved signature indels Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers ...

were identified for this genus in the following proteins: leucyl aminopeptidase, helicase-exonuclease AddAB subunit AddA, class I SAM-dependent methyltransferase, N-acetylalpha-d-glucosaminyl l-malate synthase BshA, YpdA family putative bacillithiol disulfide reductase, penicillin-binding protein 2, type II/IV secretion system protein, ammonia-forming cytochrome c nitrite reductase subunit c552,

hydroxymethylbilane synthase Porphobilinogen deaminase (hydroxymethylbilane synthase, or uroporphyrinogen I synthase) is an enzyme () that in humans is encoded by the HMBS gene. Porphobilinogen deaminase is involved in the third step of the heme biosynthetic pathway. It catal ...

acetolactate synthase The acetolactate synthase (ALS) enzyme (also known as acetohydroxy acid or acetohydroxyacid synthase, abbr. AHAS) is a protein found in plants and micro-organisms. ALS catalyzes the first step in the synthesis of the branched-chain amino acids ...

large subunit, hypothetical protein, DEAD/ DEAH box helicase and , which in most cases are exclusively shared by either all or most members of this genus. These conserved signature indels were identified through analyses of genome sequences from ''Schinkia'' species and can be used to reliably demarcate this genus from other ''Bacillaceae'' genera and bacteria in molecular terms.

Phylogeny

The currently accepted taxonomy is based on the

List of Prokaryotic names with Standing in Nomenclature List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclatu ...

(LPSN) and

National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is lo ...

(NCBI) and as of May 2021, contains a total of 2 species with validly published names. This genus was identified as a

monophyletic In biological cladistics for the classification of organisms, monophyly is the condition of a taxonomic grouping being a clade – that is, a grouping of organisms which meets these criteria: # the grouping contains its own most recent co ...

clade and phylogenetically unrelated to other ''Bacillus'' species in studies examining the taxonomic relationships within ''Bacillus''. This branching pattern is also observed in the

Genome Taxonomy Database The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving parap ...

(GTDB).

References

{{Taxonbar, from=Q107210958 Bacteria genera Bacillaceae

Biochemical characteristics and molecular signatures

Phylogeny

See also

References