RncO is a bacterial

non-coding RNA A non-coding RNA (ncRNA) is a functional RNA molecule that is not Translation (genetics), translated into a protein. The DNA sequence from which a functional non-coding RNA is transcribed is often called an RNA gene. Abundant and functionally imp ...

regulatory element found in the rnc leader sequence. The rnc

operon In genetics, an operon is a functioning unit of DNA containing a cluster of genes under the control of a single promoter. The genes are transcribed together into an mRNA strand and either translated together in the cytoplasm, or undergo splic ...

is negatively auto-regulated by transcript stability. ''rnc'', the first gene in the operon codes for

RNase III Ribonuclease III (RNase III or RNase C) (BREND3.1.26.3 is a type of ribonuclease that recognizes dsRNA and cleaves it at specific targeted locations to transform them into mature RNAs. These enzymes are a group of endoribonucleases that are cha ...

which cleaves the long rncO

stem Stem or STEM most commonly refers to: * Plant stem, a structural axis of a vascular plant * Stem group * Science, technology, engineering, and mathematics Stem or STEM can also refer to: Language and writing * Word stem, part of a word respon ...

II leading to transcript degradation and a reduction in translation. Matsunaga ''et al.'' showed that

cleavage can initiate rnc transcript decay independently of rnc gene translation. Further work has established that rncO structure and function is conserved in ''

Salmonella typhimurium ''Salmonella enterica'' subsp. ''enterica'' is a subspecies of ''Salmonella enterica'', the rod-shaped, flagellated, aerobic, Gram-negative bacterium. Many of the pathogenic serovars of the ''S. enterica'' species are in this subspecies, includin ...

''.

Structure

Functionally the first 215

nucleotides Nucleotides are Organic compound, organic molecules composed of a nitrogenous base, a pentose sugar and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both o ...

of the rnc leader have been shown to be sufficient. Within this region three

stem-loop Stem-loops are nucleic acid Biomolecular structure, secondary structural elements which form via intramolecular base pairing in single-stranded DNA or RNA. They are also referred to as hairpins or hairpin loops. A stem-loop occurs when two regi ...

s were identified. Stem-loop II is cleaved by RNase III, whereas stem-loops I and III are important for stability.

References

External links

* Cis-regulatory RNA elements {{molecular-cell-biology-stub