Raphidoistia
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The raphidophytes, formally known as Raphidophycidae or Raphidophyceae (formerly referred to as Chloromonadophyceae and Chloromonadineae), are a small group of
eukaryotic The eukaryotes ( ) constitute the Domain (biology), domain of Eukaryota or Eukarya, organisms whose Cell (biology), cells have a membrane-bound cell nucleus, nucleus. All animals, plants, Fungus, fungi, seaweeds, and many unicellular organisms ...
alga Algae ( , ; : alga ) is an informal term for any organisms of a large and diverse group of photosynthetic organisms that are not plants, and includes species from multiple distinct clades. Such organisms range from unicellular microalgae, suc ...
e that includes both marine and
freshwater Fresh water or freshwater is any naturally occurring liquid or frozen water containing low concentrations of dissolved salts and other total dissolved solids. The term excludes seawater and brackish water, but it does include non-salty mi ...
species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ...
. All raphidophytes are
unicellular A unicellular organism, also known as a single-celled organism, is an organism that consists of a single cell, unlike a multicellular organism that consists of multiple cells. Organisms fall into two general categories: prokaryotic organisms and ...
, with large cells (50 to 100
μm The micrometre (Commonwealth English as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer (American English), also commonly known by the non-SI term micron, is a unit of length in the International System ...
), but no
cell walls A cell wall is a structural layer that surrounds some cell types, found immediately outside the cell membrane. It can be tough, flexible, and sometimes rigid. Primarily, it provides the cell with structural support, shape, protection, and functi ...
. Raphidophytes possess a pair of
flagella A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many pr ...
, organised such that both originate from the same
invagination Invagination is the process of a surface folding in on itself to form a cavity, pouch or tube. In developmental biology, invagination of Epithelium, epithelial sheets occurs in many contexts during Animal embryonic development, embryonic developme ...
(or gullet). One flagellum points forwards, and is covered in hair-like
mastigonemes Mastigonemes are lateral "hairs" that attach to protistan flagella. Flimsy hairs attach to the flagella of euglenid flagellates, while stiff hairs occur in stramenopile and cryptophyte protists.Hoek, C. van den, Mann, D. G. and Jahns, H. M. ( ...
, while the other points backwards across the cell surface, lying within a
ventral Standard anatomical terms of location are used to describe unambiguously the anatomy of humans and other animals. The terms, typically derived from Latin or Greek roots, describe something in its standard anatomical position. This position prov ...
groove. Raphidophytes contain numerous
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
chloroplast A chloroplast () is a type of membrane-bound organelle, organelle known as a plastid that conducts photosynthesis mostly in plant cell, plant and algae, algal cells. Chloroplasts have a high concentration of chlorophyll pigments which captur ...
s, which contain
chlorophyll Chlorophyll is any of several related green pigments found in cyanobacteria and in the chloroplasts of algae and plants. Its name is derived from the Greek words (, "pale green") and (, "leaf"). Chlorophyll allows plants to absorb energy ...
s a, c1 and c2. They also make use of
accessory pigment Accessory pigments are light-absorbing compounds, found in photosynthetic organisms, that work in conjunction with chlorophyll ''a''. They include other forms of this pigment, such as chlorophyll ''b'' in green algal and vascular ("higher") plan ...
s including β-carotene and
diadinoxanthin Diadinoxanthin is a pigment found in phytoplankton. It has the formula C40H54O3. It gives rise to the xanthophylls diatoxanthin and dinoxanthin. Diadinoxanthin is a plastid pigment. Plastid pigments include chlorophylls a and c, fucoxanthin, he ...
. Unlike other heterokontophytes, raphidophytes do not possess the photoreceptive organelle (or eyespot) typical of this group. In terms of
ecology Ecology () is the natural science of the relationships among living organisms and their Natural environment, environment. Ecology considers organisms at the individual, population, community (ecology), community, ecosystem, and biosphere lev ...
, raphidophytes occur as
photosynthetic Photosynthesis ( ) is a Biological system, system of biological processes by which Photoautotrophism, photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical ener ...
autotroph An autotroph is an organism that can convert Abiotic component, abiotic sources of energy into energy stored in organic compounds, which can be used by Heterotroph, other organisms. Autotrophs produce complex organic compounds (such as carbohy ...
s across a range of aquatic systems. Freshwater species are more common in
acid An acid is a molecule or ion capable of either donating a proton (i.e. Hydron, hydrogen cation, H+), known as a Brønsted–Lowry acid–base theory, Brønsted–Lowry acid, or forming a covalent bond with an electron pair, known as a Lewis ...
ic waters, such as pools in
bog A bog or bogland is a wetland that accumulates peat as a deposit of dead plant materials often mosses, typically sphagnum moss. It is one of the four main types of wetlands. Other names for bogs include mire, mosses, quagmire, and musk ...
s. Marine species often produce large blooms in summer, particularly in coastal waters. Off the Japanese coast, the resulting
red tide A harmful algal bloom (HAB), or excessive algae growth, sometimes called a red tide in marine environments, is an algal bloom that causes negative impacts to other organisms by production of natural algae-produced toxins, water deoxygenation, ...
s often cause disruption to fish farms, although raphidophytes are not usually responsible for
toxic Toxicity is the degree to which a chemical substance or a particular mixture of substances can damage an organism. Toxicity can refer to the effect on a whole organism, such as an animal, bacterium, or plant, as well as the effect on a subst ...
blooms. The position of this group varied in former classifications. Some
protozoologist Protistology is a scientific discipline devoted to the study of protists, a highly diverse group of eukaryotic organisms. All eukaryotes apart from animals, plants and fungi are considered protists. Its field of study therefore overlaps with the ...
s treated the chloromonads as an order within the phytoflagellates. Some phycologists classified them with the
Xanthophyceae Yellow-green algae or the Xanthophyceae (xanthophytes) are an important group of heterokont algae. Most live in fresh water, but some are found in marine and soil habitats. They vary from single-celled flagellates to simple colonial and filamen ...
and the
Eustigmatophyceae Eustigmatophytes are a small group (17 genera; ~107 species) of eukaryotic forms of algae that includes marine, freshwater and soil-living species. All eustigmatophytes are unicellular, with coccoid cells and polysaccharide cell walls. Eus ...
in the division Xanthophyta. Others considered them as related to the Chrysophyceae, Dinophyceae, or Cryptophyceae Currently, raphidophytes are regarded as an independent lineage of algae within the class Raphidomonadea, which also includes the
heliozoa Heliozoa, commonly known as sun-animalcules, are microbial eukaryotes (protists) with stiff arms (Pseudopodia#Morphology, axopodia) radiating from their spherical bodies, which are responsible for their common name. The axopodia are microtubule- ...
n group
Actinophryida The actinophryids are an order of heliozoa, a polyphyletic array of stramenopiles, having a close relationship with pedinellids and ''Ciliophrys''. They are common in fresh water and occasionally found in marine and soil habitats. Actinophryids a ...
.


Taxonomy

The classification based on Cavalier-Smith and Scoble 2013 recognizes only one order, Chattonellales. * Subclass Raphidophycidae Cavalier-Smith 2013 aphidophyceae Chadefaud 1950 emend. Silva 1980 s.s.; Chloromonadophyceae Rothmaler 1951; Raphidophyta** Order Chattonellales Throndsen in Tomas, 1993 emend. Yamaguchi, Nakayama, Murakami & Inouye, 2010 acuolariales ; Raphidomonadida Heywood & Leedale 1983; Chloromonadina Klebs 1892*** Genus '' Viridilobus'' Demir-Hilton et al. 2012 *** Family Fibrocapsaceae Cavalier-Smith 2013 **** Genus '' Fibrocapsa'' Toriumi & Takano 1973 *** Family Haramonadaceae Cavalier-Smith 2013 **** Genus '' Haramonas'' Horiguchi 1996 *** Family Vacuolariaceae hattonellaceae ; Gonyostomaceae **** Genus '' Oltmannsia'' Schiller 1925 **** Genus '' Chlorinimonas'' Yamaguchi et al. 2010 **** Genus '' Heterosigma'' Hada 1967 ex Hara & Chihara 1987 **** Genus '' Chattonella'' Biecheler 1936 'Hornellia'' Subrahmanyan 1954; ''Hemieutreptia">Hornellia.html" ;"title="'Hornellia">'Hornellia'' Subrahmanyan 1954; ''Hemieutreptia'' Hada 1974] *** Family Vacuolariaceae **** Genus ''Swirenkoiamonas'' Skvortzov 1968 **** Genus '' Vacuolaria'' Cienkowski 1870 **** Genus '' Merotricha'' Mereschkowsky 1877 **** Genus '' Gonyostomum'' Diesing 1866


References

{{Taxonbar, from1=Q134928, from2=Q21400364 Ochrophyta