ModBase is a database of annotated
comparative protein structure models, containing models for more than 3.8 million unique protein sequences.
Models are created by the
comparative modeling pipeline ModPipe which relies on the
MODELLER
Modeller, often stylized as MODELLER, is a computer program used for homology modeling to produce models of protein tertiary structures and quaternary structures (rarer). It implements a method inspired by nuclear magnetic resonance spectroscopy ...
program.
ModBase is developed in the laboratory of
Andrej Sali at
UCSF
The University of California, San Francisco (UCSF) is a public land-grant research university in San Francisco, California, United States. It is part of the University of California system and is dedicated entirely to health science and life ...
. ModBase models are also accessible through the Protein Model Portal.
See also
*
Homology modeling
Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "''target''" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous pr ...
References
External links
* http://salilab.org/modbase
Protein databases
Protein methods
Protein structure
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