Indifference Graph
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In
graph theory In mathematics and computer science, graph theory is the study of ''graph (discrete mathematics), graphs'', which are mathematical structures used to model pairwise relations between objects. A graph in this context is made up of ''Vertex (graph ...
, a branch of mathematics, an indifference graph is an
undirected graph In discrete mathematics, particularly in graph theory, a graph is a structure consisting of a set of objects where some pairs of the objects are in some sense "related". The objects are represented by abstractions called '' vertices'' (also call ...
constructed by assigning a
real number In mathematics, a real number is a number that can be used to measure a continuous one- dimensional quantity such as a duration or temperature. Here, ''continuous'' means that pairs of values can have arbitrarily small differences. Every re ...
to each vertex and connecting two vertices by an edge when their numbers are within one unit of each other.. Indifference graphs are also the
intersection graph In graph theory, an intersection graph is a graph that represents the pattern of intersections of a family of sets. Any graph can be represented as an intersection graph, but some important special classes of graphs can be defined by the types o ...
s of sets of
unit interval In mathematics, the unit interval is the closed interval , that is, the set of all real numbers that are greater than or equal to 0 and less than or equal to 1. It is often denoted ' (capital letter ). In addition to its role in real analysi ...
s, or of properly nested intervals (intervals none of which contains any other one). Based on these two types of interval representations, these graphs are also called unit interval graphs or proper interval graphs; they form a subclass of the
interval graph In graph theory, an interval graph is an undirected graph formed from a set of intervals on the real line, with a vertex for each interval and an edge between vertices whose intervals intersect. It is the intersection graph of the intervals. In ...
s.


Equivalent characterizations

The finite indifference graphs may be equivalently characterized as *The
intersection graph In graph theory, an intersection graph is a graph that represents the pattern of intersections of a family of sets. Any graph can be represented as an intersection graph, but some important special classes of graphs can be defined by the types o ...
s of
unit interval In mathematics, the unit interval is the closed interval , that is, the set of all real numbers that are greater than or equal to 0 and less than or equal to 1. It is often denoted ' (capital letter ). In addition to its role in real analysi ...
s, *The intersection graphs of sets of intervals no two of which are nested (one containing the other),. *The claw-free
interval graph In graph theory, an interval graph is an undirected graph formed from a set of intervals on the real line, with a vertex for each interval and an edge between vertices whose intervals intersect. It is the intersection graph of the intervals. In ...
s, *The graphs that do not have an
induced subgraph In graph theory, an induced subgraph of a graph is another graph, formed from a subset of the vertices of the graph and ''all'' of the edges, from the original graph, connecting pairs of vertices in that subset. Definition Formally, let G=(V,E) ...
isomorphic to a
claw A claw is a curved, pointed appendage found at the end of a toe or finger in most amniotes (mammals, reptiles, birds). Some invertebrates such as beetles and spiders have somewhat similar fine, hooked structures at the end of the leg or Arthro ...
''K''1,3, net (a triangle with a degree-one vertex adjacent to each of the triangle vertices), sun (a triangle surrounded by three other triangles that each share one edge with the central triangle), or hole (cycle of length four or more), *The incomparability graphs of
semiorder In order theory, a branch of mathematics, a semiorder is a type of ordering for items with numerical scores, where items with widely differing scores are compared by their scores and where scores within a given margin of error are deemed incompar ...
s, *The undirected graphs that have a
linear order In mathematics, a total order or linear order is a partial order in which any two elements are comparable. That is, a total order is a binary relation \leq on some set X, which satisfies the following for all a, b and c in X: # a \leq a ( ref ...
such that, for every three vertices ordered uvw, if uw is an edge then so are uv and vw. *The graphs with no astral triple, three vertices connected pairwise by paths that avoid the third vertex and also do not contain two consecutive neighbors of the third vertex, *The graphs in which each connected component contains a path in which each
maximal clique In graph theory, a clique ( or ) is a subset of vertices of an undirected graph such that every two distinct vertices in the clique are adjacent. That is, a clique of a graph G is an induced subgraph of G that is complete. Cliques are one of t ...
of the component forms a contiguous sub-path,. *The graphs whose vertices can be numbered in such a way that every shortest path forms a
monotonic sequence In mathematics, a sequence is an enumerated collection of objects in which repetitions are allowed and order matters. Like a set, it contains members (also called ''elements'', or ''terms''). The number of elements (possibly infinite) is calle ...
, *The graphs whose adjacency matrices can be ordered such that, in each row and each column, the nonzeros of the matrix form a contiguous interval adjacent to the main diagonal of the matrix. *The induced subgraphs of powers of chordless paths.. *The
leaf power In the mathematical area of graph theory, a -leaf power of a tree is a graph whose vertices are the leaves of and whose edges connect pairs of leaves whose distance in is at most . That is, is an induced subgraph of the graph power , induce ...
s having a leaf root which is a caterpillar. For infinite graphs, some of these definitions may differ.


Properties

Because they are special cases of
interval graph In graph theory, an interval graph is an undirected graph formed from a set of intervals on the real line, with a vertex for each interval and an edge between vertices whose intervals intersect. It is the intersection graph of the intervals. In ...
s, indifference graphs have all the properties of interval graphs; in particular they are a special case of the chordal graphs and of the
perfect graph In graph theory, a perfect graph is a Graph (discrete mathematics), graph in which the Graph coloring, chromatic number equals the size of the maximum clique, both in the graph itself and in every induced subgraph. In all graphs, the chromatic nu ...
s. They are also a special case of the
circle graph In graph theory, a circle graph is the intersection graph of a Chord diagram (mathematics), chord diagram. That is, it is an undirected graph whose vertices can be associated with a finite system of Chord (geometry), chords of a circle such tha ...
s, something that is not true of interval graphs more generally. In the
Erdős–Rényi model In the mathematical field of graph theory, the Erdős–Rényi model refers to one of two closely related models for generating random graphs or the evolution of a random network. These models are named after Hungarians, Hungarian mathematicians ...
of
random graph In mathematics, random graph is the general term to refer to probability distributions over graphs. Random graphs may be described simply by a probability distribution, or by a random process which generates them. The theory of random graphs l ...
s, an n-vertex graph whose number of edges is significantly less than n^ will be an indifference graph with high probability, whereas a graph whose number of edges is significantly more than n^ will not be an indifference graph with high probability. The
bandwidth Bandwidth commonly refers to: * Bandwidth (signal processing) or ''analog bandwidth'', ''frequency bandwidth'', or ''radio bandwidth'', a measure of the width of a frequency range * Bandwidth (computing), the rate of data transfer, bit rate or thr ...
of an arbitrary graph G is one less than the size of the
maximum clique In graph theory, a clique ( or ) is a subset of vertices of an undirected graph such that every two distinct vertices in the clique are adjacent. That is, a clique of a graph G is an induced subgraph of G that is complete. Cliques are one of th ...
in an indifference graph that contains G as a subgraph and is chosen to minimize the size of the maximum clique. This property parallels similar relations between
pathwidth In graph theory, a path decomposition of a graph is, informally, a representation of as a "thickened" path graph, and the pathwidth of is a number that measures how much the path was thickened to form . More formally, a path-decomposition ...
and
interval graph In graph theory, an interval graph is an undirected graph formed from a set of intervals on the real line, with a vertex for each interval and an edge between vertices whose intervals intersect. It is the intersection graph of the intervals. In ...
s, and between
treewidth In graph theory, the treewidth of an undirected graph is an integer number which specifies, informally, how far the graph is from being a tree. The smallest treewidth is 1; the graphs with treewidth 1 are exactly the trees and the forests ...
and chordal graphs. A weaker notion of width, the
clique-width In graph theory, the clique-width of a graph is a parameter that describes the structural complexity of the graph; it is closely related to treewidth, but unlike treewidth it can be small for dense graphs. It is defined as the minimum number of ...
, may be arbitrarily large on indifference graphs. However, every proper subclass of the indifference graphs that is closed under
induced subgraph In graph theory, an induced subgraph of a graph is another graph, formed from a subset of the vertices of the graph and ''all'' of the edges, from the original graph, connecting pairs of vertices in that subset. Definition Formally, let G=(V,E) ...
s has bounded clique-width.. Every
connected Connected may refer to: Film and television * ''Connected'' (2008 film), a Hong Kong remake of the American movie ''Cellular'' * '' Connected: An Autoblogography About Love, Death & Technology'', a 2011 documentary film * ''Connected'' (2015 TV ...
indifference graph has a
Hamiltonian path In the mathematical field of graph theory, a Hamiltonian path (or traceable path) is a path in an undirected or directed graph that visits each vertex exactly once. A Hamiltonian cycle (or Hamiltonian circuit) is a cycle that visits each vert ...
.. An indifference graph has a
Hamiltonian cycle In the mathematics, mathematical field of graph theory, a Hamiltonian path (or traceable path) is a path (graph theory), path in an undirected or directed graph that visits each vertex (graph theory), vertex exactly once. A Hamiltonian cycle (or ...
if and only if it is biconnected.. Indifference graphs obey the
reconstruction conjecture Informally, the reconstruction conjecture in graph theory says that graphs are determined uniquely by their subgraphs. It is due to KellyKelly, P. J.A congruence theorem for trees ''Pacific J. Math.'' 7 (1957), 961–968. and Ulam.Ulam, S. ...
: they are uniquely determined by their vertex-deleted subgraphs.


Algorithms

As with higher dimensional
unit disk graph In geometric graph theory, a unit disk graph is the intersection graph of a family of unit disks in the Euclidean plane. That is, it is a graph with one vertex for each disk in the family, and with an edge between two vertices whenever the corres ...
s, it is possible to transform a set of points into their indifference graph, or a set of unit intervals into their unit interval graph, in
linear time In theoretical computer science, the time complexity is the computational complexity that describes the amount of computer time it takes to run an algorithm. Time complexity is commonly estimated by counting the number of elementary operations ...
as measured in terms of the size of the output graph. The algorithm rounds the points (or interval centers) down to the nearest smaller integer, uses a
hash table In computer science, a hash table is a data structure that implements an associative array, also called a dictionary or simply map; an associative array is an abstract data type that maps Unique key, keys to Value (computer science), values. ...
to find all pairs of points whose rounded integers are within one of each other (the fixed-radius near neighbors problem), and filters the resulting list of pairs for the ones whose unrounded values are also within one of each other. It is possible to test whether a given graph is an indifference graph in linear time, by using PQ trees to construct an interval representation of the graph and then testing whether a vertex ordering derived from this representation satisfies the properties of an indifference graph. It is also possible to base a recognition algorithm for indifference graphs on chordal graph recognition algorithms. Several alternative linear time recognition algorithms are based on
breadth-first search Breadth-first search (BFS) is an algorithm for searching a tree data structure for a node that satisfies a given property. It starts at the tree root and explores all nodes at the present depth prior to moving on to the nodes at the next dept ...
or
lexicographic breadth-first search In computer science, lexicographic breadth-first search or Lex-BFS is a linear time algorithm for ordering the vertices of a graph. The algorithm is different from a breadth-first search, but it produces an ordering that is consistent with breadth- ...
rather than on the relation between indifference graphs and interval graphs. Once the vertices have been sorted by the numerical values that describe an indifference graph (or by the sequence of unit intervals in an interval representation) the same ordering can be used to find an optimal
graph coloring In graph theory, graph coloring is a methodic assignment of labels traditionally called "colors" to elements of a Graph (discrete mathematics), graph. The assignment is subject to certain constraints, such as that no two adjacent elements have th ...
for these graphs, to solve the
shortest path problem In graph theory, the shortest path problem is the problem of finding a path between two vertices (or nodes) in a graph such that the sum of the weights of its constituent edges is minimized. The problem of finding the shortest path between t ...
, and to construct
Hamiltonian path In the mathematical field of graph theory, a Hamiltonian path (or traceable path) is a path in an undirected or directed graph that visits each vertex exactly once. A Hamiltonian cycle (or Hamiltonian circuit) is a cycle that visits each vert ...
s and
maximum matching Maximum cardinality matching is a fundamental problem in graph theory. We are given a graph , and the goal is to find a matching containing as many edges as possible; that is, a maximum cardinality subset of the edges such that each vertex is a ...
s, all in linear time. A
Hamiltonian cycle In the mathematics, mathematical field of graph theory, a Hamiltonian path (or traceable path) is a path (graph theory), path in an undirected or directed graph that visits each vertex (graph theory), vertex exactly once. A Hamiltonian cycle (or ...
can be found from a proper interval representation of the graph in time O(n\log n), but when the graph itself is given as input, the same problem admits linear-time solution that can be generalized to interval graphs.
List coloring In graph theory, a branch of mathematics, list coloring is a type of graph coloring where each vertex can be restricted to a list of allowed colors. It was first studied in the 1970s in independent papers by Vizing and by Erdős, Rubin, and T ...
remains
NP-complete In computational complexity theory, NP-complete problems are the hardest of the problems to which ''solutions'' can be verified ''quickly''. Somewhat more precisely, a problem is NP-complete when: # It is a decision problem, meaning that for any ...
even when restricted to indifference graphs. However, it is
fixed-parameter tractable In computer science, parameterized complexity is a branch of computational complexity theory that focuses on classifying computational problems according to their inherent difficulty with respect to ''multiple'' parameters of the input or output. ...
when parameterized by the total number of colors in the input.


Applications

In
mathematical psychology Mathematical psychology is an approach to psychology, psychological research that is based on mathematical modeling of perceptual, thought, Cognition, cognitive and motor processes, and on the establishment of law-like rules that relate quantifi ...
, indifference graphs arise from
utility In economics, utility is a measure of a certain person's satisfaction from a certain state of the world. Over time, the term has been used with at least two meanings. * In a normative context, utility refers to a goal or objective that we wish ...
functions, by scaling the function so that one unit represents a difference in utilities small enough that individuals can be assumed to be indifferent to it. In this application, pairs of items whose utilities have a large difference may be partially ordered by the relative order of their utilities, giving a
semiorder In order theory, a branch of mathematics, a semiorder is a type of ordering for items with numerical scores, where items with widely differing scores are compared by their scores and where scores within a given margin of error are deemed incompar ...
. In
bioinformatics Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, ...
, the problem of augmenting a colored graph to a properly colored unit interval graph can be used to model the detection of false negatives in
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
sequence assembly In bioinformatics, sequence assembly refers to aligning and merging fragments from a longer DNA sequence in order to reconstruct the original sequence. This is needed as DNA sequencing technology might not be able to 'read' whole genomes in one g ...
from complete
digests Digest may refer to: Biology *Digestion of food *Restriction digest Literature and publications *'' The Digest'', formerly the English and Empire Digest *Digest size magazine format * ''Digest'' (Roman law), also known as ''Pandects'', a digest ...
..


See also

*
Threshold graph In graph theory, a threshold graph is a graph that can be constructed from a one-vertex graph by repeated applications of the following two operations: # Addition of a single isolated vertex to the graph. # Addition of a single dominating vertex ...
, a graph whose edges are determined by sums of vertex labels rather than differences of labels *
Trivially perfect graph In graph theory, a trivially perfect graph is a graph with the property that in each of its induced subgraphs the size of the maximum independent set equals the number of maximal cliques. Trivially perfect graphs were first studied by but were na ...
, interval graphs for which every pair of intervals is nested or disjoint rather than properly intersecting *
Unit disk graph In geometric graph theory, a unit disk graph is the intersection graph of a family of unit disks in the Euclidean plane. That is, it is a graph with one vertex for each disk in the family, and with an edge between two vertices whenever the corres ...
, a two-dimensional analogue of the indifference graphs


References

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External links


Information System on Graph Class Inclusions
Perfect graphs Intersection classes of graphs Geometric graphs