The hypocotyl (short for "hypocotyledonous stem", meaning "below seed leaf") is the stem of a germinating

seedling A seedling is a young sporophyte developing out of a plant embryo from a seed. Seedling development starts with germination of the seed. A typical young seedling consists of three main parts: the radicle (embryonic root), the hypocotyl (embry ...

, found below the

cotyledon A cotyledon ( ; ; "a cavity, small cup, any cup-shaped hollow", gen. (), ) is a "seed leaf" – a significant part of the embryo within the seed of a plant – and is formally defined as "the embryonic leaf in seed-bearing plants, one or mor ...

s (seed leaves) and above the

radicle In botany, the radicle is the first part of a seedling (a growing plant embryo) to emerge from the seed during the process of germination. The radicle is the embryonic root of the plant, and grows downward in the soil (the shoot emerges from t ...

(

root In vascular plants, the roots are the plant organ, organs of a plant that are modified to provide anchorage for the plant and take in water and nutrients into the plant body, which allows plants to grow taller and faster. They are most often bel ...

Eudicots

As the plant

embryo An embryo ( ) is the initial stage of development for a multicellular organism. In organisms that reproduce sexually, embryonic development is the part of the life cycle that begins just after fertilization of the female egg cell by the male sp ...

grows at germination, it sends out a shoot called a

that becomes the primary root, and then penetrates down into the

soil Soil, also commonly referred to as earth, is a mixture of organic matter, minerals, gases, water, and organisms that together support the life of plants and soil organisms. Some scientific definitions distinguish dirt from ''soil'' by re ...

. After emergence of the radicle, the hypocotyl emerges and lifts the growing tip (usually including the seed coat) above the ground, bearing the embryonic leaves (called

s), and the plumule that gives rise to the first true leaves. The hypocotyl is the primary organ of extension of the young plant and develops into the stem.

Monocots

The early development of a

monocot Monocotyledons (), commonly referred to as monocots, (Lilianae ''sensu'' Chase & Reveal) are flowering plants whose seeds contain only one Embryo#Plant embryos, embryonic leaf, or cotyledon. A monocot taxon has been in use for several decades, but ...

seedling like

cereal A cereal is a grass cultivated for its edible grain. Cereals are the world's largest crops, and are therefore staple foods. They include rice, wheat, rye, oats, barley, millet, and maize ( Corn). Edible grains from other plant families, ...

s and other grasses is somewhat different. A structure called the coleoptile, essentially a part of the ''cotyledon'', protects the young stem and plumule as growth pushes them up through the soil. A mesocotyl—that part of the young plant that lies between the seed (which remains buried) and the plumule—extends the shoot up to the soil surface, where secondary roots develop from just beneath the plumule. The primary root from the radicle may then fail to develop further. The mesocotyl is considered to be partly hypocotyl and partly cotyledon (see

seed In botany, a seed is a plant structure containing an embryo and stored nutrients in a protective coat called a ''testa''. More generally, the term "seed" means anything that can be Sowing, sown, which may include seed and husk or tuber. Seeds ...

). Not all monocots develop like the grasses. The

onion An onion (''Allium cepa'' , from Latin ), also known as the bulb onion or common onion, is a vegetable that is the most widely cultivated species of the genus '' Allium''. The shallot is a botanical variety of the onion which was classifie ...

develops in a manner similar to the first sequence described above, the seed coat and

endosperm The endosperm is a tissue produced inside the seeds of most of the flowering plants following double fertilization. It is triploid (meaning three chromosome sets per nucleus) in most species, which may be auxin-driven. It surrounds the Embryo#Pla ...

(stored food reserve) pulled upwards as the cotyledon extends. Later, the first true leaf grows from the node between the radicle and the sheath-like cotyledon, breaking through the cotyledon to grow past it.

Storage organ

In some plants, the hypocotyl becomes enlarged as a storage organ. Examples include cyclamen, gloxinia and celeriac. In cyclamen this storage organ is called a

tuber Tubers are a type of enlarged structure that plants use as storage organs for nutrients, derived from stems or roots. Tubers help plants perennate (survive winter or dry months), provide energy and nutrients, and are a means of asexual reproduc ...

Hypocotyl elongation assay

One of the widely used assays in the field of photobiology is the investigation of the effect of changes in light quantity and quality on hypocotyl elongation. It is frequently used to study the growth promoting vs. growth repressing effects of application of plant hormones like ethylene. Under normal light conditions, hypocotyl growth is controlled by a process called photomorphogenesis, while shading the seedlings evokes a rapid transcriptional response which negatively regulates photomorphogenesis and results in increased rates of hypocotyl growth.Debatosh Da
"Ethylene- and shade-induced hypocotyl elongation share transcriptome patterns and functional regulators"
"Plant Physiology",21-06-2016 This rate is highest when plants are kept in darkness mediated by a process called skotomorphogenesis, which contrasts photomorphogenesis.

References

{{Reflist Plant anatomy Plant morphology Plant reproduction

Eudicots

Monocots

Storage organ

Hypocotyl elongation assay

See also

References