Homo Denisovan
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The Denisovans or Denisova hominins ( ) are an
extinct Extinction is the termination of an organism by the death of its Endling, last member. A taxon may become Functional extinction, functionally extinct before the death of its last member if it loses the capacity to Reproduction, reproduce and ...
species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ...
or
subspecies In Taxonomy (biology), biological classification, subspecies (: subspecies) is a rank below species, used for populations that live in different areas and vary in size, shape, or other physical characteristics (Morphology (biology), morpholog ...
of
archaic human ''Homo'' () is a genus of great ape (family Hominidae) that emerged from the genus ''Australopithecus'' and encompasses only a single extant species, ''Homo sapiens'' (modern humans), along with a number of extinct species (collectively called ...
that ranged across Asia during the
Lower Lower may refer to: * ''Lower'' (album), 2025 album by Benjamin Booker *Lower (surname) *Lower Township, New Jersey *Lower Receiver (firearms) *Lower Wick Lower Wick is a small hamlet located in the county of Gloucestershire, England. It is sit ...
and
Middle Paleolithic The Middle Paleolithic (or Middle Palaeolithic) is the second subdivision of the Paleolithic or Old Stone Age as it is understood in Europe, Africa and Asia. The term Middle Stone Age is used as an equivalent or a synonym for the Middle P ...
, and lived, based on current evidence, from 285 thousand to 25 thousand years ago. Denisovans are known from few physical remains; consequently, most of what is known about them comes from
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
evidence. No formal species name has been established pending more complete fossil material. The first identification of a Denisovan individual occurred in 2010, based on
mitochondrial DNA Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
(mtDNA) extracted from a juvenile finger bone excavated from the Siberian
Denisova Cave Denisova Cave () is a cave in the Altai Mountains, Bashelaksky Range of the Altai Mountains in Siberia, Russia. It is widely known for having provided items of great archaeology, paleoarchaeological and paleontology, paleontological interest. ...
in the
Altai Mountains The Altai Mountains (), also spelled Altay Mountains, are a mountain range in Central Asia, Central and East Asia, where Russia, China, Mongolia, and Kazakhstan converge, and where the rivers Irtysh and Ob River, Ob have their headwaters. The ...
in 2008.
Nuclear DNA Nuclear DNA (nDNA), or nuclear deoxyribonucleic acid, is the DNA contained within each cell nucleus of a eukaryotic organism. It encodes for the majority of the genome in eukaryotes, with mitochondrial DNA and plastid DNA coding for the rest. ...
indicates close affinities with
Neanderthal Neanderthals ( ; ''Homo neanderthalensis'' or sometimes ''H. sapiens neanderthalensis'') are an extinction, extinct group of archaic humans who inhabited Europe and Western and Central Asia during the Middle Pleistocene, Middle to Late Plei ...
s. The cave was also periodically inhabited by Neanderthals, but it is unclear whether Neanderthals and Denisovans ever cohabited in the cave. Additional specimens from Denisova Cave were subsequently identified, as was a single specimen from the
Baishiya Karst Cave Baishiya Karst Cave () is a high-altitude paleoanthropological site and a Tibetan Buddhist sanctuary located on the northeastern edge of the Tibetan Plateau in Xiahe County, Gansu, China. This karst cave is the site of the discovery of the earl ...
on the
Tibetan Plateau The Tibetan Plateau, also known as the Qinghai–Tibet Plateau or Qingzang Plateau, is a vast elevated plateau located at the intersection of Central Asia, Central, South Asia, South, and East Asia. Geographically, it is located to the north of H ...
, and Cobra Cave in the
Annamite Mountains The Annamite Range (; ) is a major mountain range of Mainland Southeast Asia, extending approximately through Laos, Vietnam, and a small area in northeast Cambodia. Geography The highest points of the Annamite Range are the -high Phou Bia, th ...
of Laos. DNA evidence suggests they had dark skin, eyes, and hair, and had a Neanderthal-like build and facial features. However, they had larger
molars The molars or molar teeth are large, flat tooth, teeth at the back of the mouth. They are more developed in mammal, mammals. They are used primarily to comminution, grind food during mastication, chewing. The name ''molar'' derives from Latin, '' ...
which are reminiscent of
Middle Middle or The Middle may refer to: * Centre (geometry), the point equally distant from the outer limits. Places * Middle (sheading), a subdivision of the Isle of Man * Middle Bay (disambiguation) * Middle Brook (disambiguation) * Middle Creek ...
to
Late Pleistocene The Late Pleistocene is an unofficial Age (geology), age in the international geologic timescale in chronostratigraphy, also known as the Upper Pleistocene from a Stratigraphy, stratigraphic perspective. It is intended to be the fourth division ...
archaic humans and
australopithecine The australopithecines (), formally Australopithecina or Hominina, are generally any species in the related genera of ''Australopithecus'' and ''Paranthropus''. It may also include members of '' Kenyanthropus'', ''Ardipithecus'', and '' Praeant ...
s. Denisovans apparently interbred with modern humans, with a high percentage (roughly 5%) occurring in
Melanesians Melanesians are the predominant and Indigenous peoples of Oceania, indigenous inhabitants of Melanesia, in an area stretching from New Guinea to the Fiji Islands. Most speak one of the many languages of the Austronesian languages, Austronesian l ...
,
Aboriginal Australians Aboriginal Australians are the various indigenous peoples of the Mainland Australia, Australian mainland and many of its islands, excluding the ethnically distinct people of the Torres Strait Islands. Humans first migrated to Australia (co ...
, and Filipino Negritos. This distribution suggests that there were Denisovan populations across Asia. There is also evidence of interbreeding with the Altai Neanderthal population, with about 17% of the Denisovan genome from Denisova Cave deriving from them. A first-generation hybrid nicknamed " Denny" was discovered with a Denisovan father and a Neanderthal mother. Additionally, 4% of the Denisovan genome comes from an unknown archaic human species, which diverged from modern humans over one million years ago.


Taxonomy

Denisovans may represent a new species of ''
Homo ''Homo'' () is a genus of great ape (family Hominidae) that emerged from the genus ''Australopithecus'' and encompasses only a single extant species, ''Homo sapiens'' (modern humans), along with a number of extinct species (collectively called ...
'' or an archaic subspecies of ''
Homo sapiens Humans (''Homo sapiens'') or modern humans are the most common and widespread species of primate, and the last surviving species of the genus ''Homo''. They are Hominidae, great apes characterized by their Prehistory of nakedness and clothing ...
'' (modern humans), but there are too few fossils to erect a proper
taxon In biology, a taxon (back-formation from ''taxonomy''; : taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and ...
. Proactively proposed species names for Denisovans are ''H. denisova'' or ''H. altaiensis''. Some older findings may or may not belong to the Denisovan line, but Asia is not well mapped in regard to
human evolution ''Homo sapiens'' is a distinct species of the hominid family of primates, which also includes all the great apes. Over their evolutionary history, humans gradually developed traits such as Human skeletal changes due to bipedalism, bipedalism, de ...
. Such findings include the Dali skull, the
Xujiayao Xujiayao, located in the Nihewan Basin in China, is an early Late Pleistocene paleoanthropological site famous for its archaic hominin fossils. Location Xujiayao is located on the west bank of the Liyi River, a tributary of the Sanggan River. X ...
hominin,
Maba Man Maba Man () is a pre-modern hominin whose remains were discovered in 1958 in caves near the town called Maba, near Shaoguan city in the northern part of Guangdong province, China.''Wu R. K.'' et ''Pang R.-C.'' Fossil human skull of early Paleoan ...
, the
Jinniushan Jinniushan () is a Middle Pleistocene paleoanthropological site, dating to around 260,000 BP, most famous for its archaic hominin fossils. The site is located near Yingkou, Liaoning, China. Several new species of extinct birds were also discovere ...
hominin, and the
Narmada Human The Narmada Human, originally the Narmada Man, is a species of extinct human that lived in central India during the Middle and Late Pleistocene. From a skull cup discovered from the bank of the Narmada River in Madhya Pradesh in 1982, the discover ...
. The
Xiahe mandible The Xiahe mandible (, ) is a hominin fossil jaw (mandible) discovered in Baishiya Karst Cave, located on the northeastern edge of the Tibetan Plateau in Xiahe County, Gansu, China. By the use of palaeoproteomic analysis, it is the first confirm ...
shows morphological similarities to some later East Asian fossils such as
Penghu 1 Penghu 1 is a fossil jaw (mandible) belonging to an extinct hominin species of the genus ''Homo.'' It was collected from seafloor sediments of the Penghu Channel off the coast of Taiwan, dating to sometime in the Middle Pleistocene or Late Pleis ...
, but also to Chinese ''H. erectus''. In 2021, Chinese palaeoanthropologist Qiang Ji suggested his newly erected species, ''
H. longi ''Homo longi'' is an extinct species of archaic human identified from a nearly complete skull, nicknamed 'Dragon Man', from Harbin on the Northeast China Plain, dating to at minimum 146,000 years ago during the Middle Pleistocene. The skull was d ...
'', may represent the Denisovans, based on the similarity between the type specimen's molar and that of the Xiahe mandible. In 2024, paleoanthropologists Christopher Bae and Xiujie Wu designated the
Xujiayao Xujiayao, located in the Nihewan Basin in China, is an early Late Pleistocene paleoanthropological site famous for its archaic hominin fossils. Location Xujiayao is located on the west bank of the Liyi River, a tributary of the Sanggan River. X ...
fossils as the
holotype A holotype (Latin: ''holotypus'') is a single physical example (or illustration) of an organism used when the species (or lower-ranked taxon) was formally described. It is either the single such physical example (or illustration) or one of s ...
of the species ''
Homo juluensis ''Homo juluensis'' is a proposed extinct species of archaic human from the Middle Pleistocene of China which would encompass Xujiayao, Xuchang Man, Penghu 1, and possibly the Denisovans. Research history The species classification of archaic ...
'', and suggested sinking Denisovans into this species. They recommended relegating the Dali Man and similar specimens to ''H. longi''.


Discovery

Denisova Cave Denisova Cave () is a cave in the Altai Mountains, Bashelaksky Range of the Altai Mountains in Siberia, Russia. It is widely known for having provided items of great archaeology, paleoarchaeological and paleontology, paleontological interest. ...
is located in
Altai Krai Altai Krai (, ) is a federal subject of Russia (a krai). It borders, clockwise from the west, Kazakhstan ( East Kazakhstan Region, Abai Region and Pavlodar Region), Novosibirsk and Kemerovo, and the Altai Republic. The krai's administrative ce ...
, Russia, in south-central
Siberia Siberia ( ; , ) is an extensive geographical region comprising all of North Asia, from the Ural Mountains in the west to the Pacific Ocean in the east. It has formed a part of the sovereign territory of Russia and its predecessor states ...
, on the western edges of the
Altai Mountains The Altai Mountains (), also spelled Altay Mountains, are a mountain range in Central Asia, Central and East Asia, where Russia, China, Mongolia, and Kazakhstan converge, and where the rivers Irtysh and Ob River, Ob have their headwaters. The ...
. It is named after Denis (Dyonisiy), a Russian
Old Believer Old Believers or Old Ritualists (Russian: староверы, ''starovery'' or старообрядцы, ''staroobryadtsy'') is the common term for several religious groups, which maintain the old liturgical and ritual practices of the Russian ...
hermit A hermit, also known as an eremite (adjectival form: hermitic or eremitic) or solitary, is a person who lives in seclusion. Eremitism plays a role in a variety of religions. Description In Christianity, the term was originally applied to a Chr ...
who lived there in the 18th century. The cave was first inspected for fossils in the 1970s by
Soviet The Union of Soviet Socialist Republics. (USSR), commonly known as the Soviet Union, was a List of former transcontinental countries#Since 1700, transcontinental country that spanned much of Eurasia from 1922 until Dissolution of the Soviet ...
paleontologist Paleontology, also spelled as palaeontology or palæontology, is the scientific study of the life of the past, mainly but not exclusively through the study of fossils. Paleontologists use fossils as a means to classify organisms, measure geolo ...
Nikolai Ovodov, who was looking for remains of
canid Canidae (; from Latin, ''canis'', "dog") is a family (biology), biological family of caniform carnivorans, constituting a clade. A member of this family is also called a canid (). The family includes three subfamily, subfamilies: the Caninae, a ...
s. In 2008, Michael Shunkov from the
Russian Academy of Sciences The Russian Academy of Sciences (RAS; ''Rossíyskaya akadémiya naúk'') consists of the national academy of Russia; a network of scientific research institutes from across the Russian Federation; and additional scientific and social units such ...
and other Russian
archaeologists Archaeology or archeology is the study of human activity through the recovery and analysis of material culture. The archaeological record consists of Artifact (archaeology), artifacts, architecture, biofact (archaeology), biofacts or ecofacts, ...
from the Institute of Archaeology and Ethnography of the
Siberian Branch of the Russian Academy of Sciences The Siberian Branch of the Russian Academy of Sciences (SBRAS) was established by the Decree of the Government of the USSR which was based on the proposal of Mikhail Lavrentyev, Sergei Sobolev and Sergey Khristianovich in 1957 as a regional d ...
in
Novosibirsk Novosibirsk is the largest city and administrative centre of Novosibirsk Oblast and the Siberian Federal District in Russia. As of the 2021 Russian census, 2021 census, it had a population of 1,633,595, making it the most populous city in Siber ...
Akademgorodok Akademgorodok ( rus, Академгородок, p=ɐkəˌdʲemɡərɐˈdok, "Academic Town") is a part of the Sovetsky City District, Novosibirsk, Sovetsky District of the city of Novosibirsk, Russia, located south of the city center and abou ...
investigated the cave and found the finger bone of a juvenile female
hominin The Hominini (hominins) form a taxonomic tribe of the subfamily Homininae (hominines). They comprise two extant genera: ''Homo'' (humans) and '' Pan'' (chimpanzees and bonobos), and in standard usage exclude the genus '' Gorilla'' ( gorillas) ...
originally dated to 50–30,000 years ago. The estimate has changed to 76,200–51,600 years ago. The specimen was originally named X-woman because
matrilineal Matrilineality, at times called matriliny, is the tracing of kinship through the female line. It may also correlate with a social system in which people identify with their matriline, their mother's lineage, and which can involve the inheritan ...
mitochondrial DNA Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
(mtDNA) extracted from the bone demonstrated it to belong to a novel ancient hominin, genetically distinct both from contemporary modern humans and from
Neanderthal Neanderthals ( ; ''Homo neanderthalensis'' or sometimes ''H. sapiens neanderthalensis'') are an extinction, extinct group of archaic humans who inhabited Europe and Western and Central Asia during the Middle Pleistocene, Middle to Late Plei ...
s. In 2019, Greek archaeologist Katerina Douka and colleagues
radiocarbon dated Radiocarbon dating (also referred to as carbon dating or carbon-14 dating) is a method for determining the age of an object containing organic material by using the properties of radiocarbon, a radioactive isotope of carbon. The method was de ...
specimens from Denisova Cave, and estimated that Denisova 2 (the oldest specimen) lived 195,000–122,700 years ago. Older Denisovan DNA collected from sediments in the East Chamber dates to 217,000 years ago. Based on artifacts also discovered in the cave, hominin occupation (most likely by Denisovans) began 287±41 or 203±14 ka. Neanderthals were also present 193±12 ka and 97±11 ka, possibly concurrently with Denisovans.


Specimens

The fossils of multiple distinct Denisovan individuals from
Denisova Cave Denisova Cave () is a cave in the Altai Mountains, Bashelaksky Range of the Altai Mountains in Siberia, Russia. It is widely known for having provided items of great archaeology, paleoarchaeological and paleontology, paleontological interest. ...
have been identified through their
ancient DNA Ancient DNA (aDNA) is DNA isolated from ancient sources (typically Biological specimen, specimens, but also environmental DNA). Due to degradation processes (including Crosslinking of DNA, cross-linking, deamination and DNA fragmentation, fragme ...
(aDNA): Denisova 2, 3, 4, 8, 11, 19, 20, 21 and 25. An mtDNA-based phylogenetic analysis of these individuals suggested that Denisova 19, 20, and 21 are the oldest, followed by Denisova 2, then Denisova 8; while Denisova 3 and Denisova 4 were roughly contemporaneous. The mtDNA from Denisova 4 bore a high similarity to that of Denisova 3, indicating that they belonged to the same population. Denisova Cave contained the only known examples of Denisovans until 2019, when a research group led by
Fahu Chen Chen Fahu (; born December 1962) is a Chinese geographer, geologist and climatologist who has served as Director of the Institute of Tibet Plateau Research of the Chinese Academy of Sciences since 2018. He formerly served as professor and Vice P ...
,
Dongju Zhang Zhang Dongju (; born 1982) is a Chinese archeologist and an associate professor at the College of Earth and Environmental Sciences of Lanzhou University. Zhang's research determined that the Xiahe mandible found in the Baishiya Karst Cave on ...
, and
Jean-Jacques Hublin Jean-Jacques Hublin (born 30 November 1953) is a French people, French paleoanthropology, paleoanthropologist. He is a professor at the Max Planck Society, Leiden University and the University of Leipzig and the founder and director of the Departm ...
described a partial mandible discovered in 1980 by a Buddhist monk in the
Baishiya Karst Cave Baishiya Karst Cave () is a high-altitude paleoanthropological site and a Tibetan Buddhist sanctuary located on the northeastern edge of the Tibetan Plateau in Xiahe County, Gansu, China. This karst cave is the site of the discovery of the earl ...
on the
Tibetan Plateau The Tibetan Plateau, also known as the Qinghai–Tibet Plateau or Qingzang Plateau, is a vast elevated plateau located at the intersection of Central Asia, Central, South Asia, South, and East Asia. Geographically, it is located to the north of H ...
in China. Known as the Xiahe mandible, the fossil became part of the collection of
Lanzhou University Lanzhou University () is a public university in Lanzhou, Gansu, China. It is affiliated with the Ministry of Education of China. The university is part of Project 211, Project 985, and the Double First-Class Construction. Founded in 1909, the ...
, where it remained unstudied until 2010. It was determined by
ancient protein Ancient proteins are complex mixtures and the term palaeoproteomics is used to characterise the study of proteomes in the past. Ancients proteins have been recovered from a wide range of archaeological materials, including bones, teeth, eggshells, ...
analysis to contain
collagen Collagen () is the main structural protein in the extracellular matrix of the connective tissues of many animals. It is the most abundant protein in mammals, making up 25% to 35% of protein content. Amino acids are bound together to form a trip ...
that by sequence was found to have close affiliation to that of the Denisovans from Denisova Cave, while uranium decay dating of the
carbonate A carbonate is a salt of carbonic acid, (), characterized by the presence of the carbonate ion, a polyatomic ion with the formula . The word "carbonate" may also refer to a carbonate ester, an organic compound containing the carbonate group ...
crust enshrouding the specimen indicated it was more than 160,000 years old. The identity of this population was later confirmed through study of
environmental DNA Environmental DNA or eDNA is DNA that is collected from a variety of environmental samples such as soil, seawater, snow or air, rather than directly sampled from an individual organism. As various organisms interact with the environment, DNA ...
, which found Denisovan mtDNA in sediment layers ranging in date from 100,000 to 60,000 years before present, and perhaps more recent. A 2024 reanalysis identified a partial Denisovan rib fragment dating to between 48,000 and 32,000 BP. In 2018, a team of Laotian, French, and American anthropologists, who had been excavating caves in the Laotian jungle of the
Annamite Mountains The Annamite Range (; ) is a major mountain range of Mainland Southeast Asia, extending approximately through Laos, Vietnam, and a small area in northeast Cambodia. Geography The highest points of the Annamite Range are the -high Phou Bia, th ...
since 2008, was directed by local children to the site Tam Ngu Hao 2 ("Cobra Cave") where they recovered a human tooth. The tooth (catalogue number TNH2-1) developmentally matches a 3.5 to 8.5 year old, and a lack of
amelogenin Amelogenins are a group of protein isoforms produced by alternative splicing or proteolysis from the '' AMELX'' gene, on the X chromosome, and also the '' AMELY'' gene in males, on the Y chromosome. They are involved in amelogenesis, the develo ...
(a protein on the
Y chromosome The Y chromosome is one of two sex chromosomes in therian mammals and other organisms. Along with the X chromosome, it is part of the XY sex-determination system, in which the Y is the sex-determining chromosome because the presence of the ...
) suggests it belonged to a girl, barring extreme degradation of the protein over a long period of time. Dental proteome analysis was inconclusive for this specimen, but the team found it anatomically comparable with the Xiahe mandible, and so tentatively categorized it as a Denisovan, although they could not rule out it being Neanderthal. The tooth probably dates to 164,000 to 131,000 years ago. In 2022, a team from Germany, Austria, Russia and the UK found 3 Denisovans (Denisova 19, 20, 21) from layer 15 of the East Chamber, in Denisova Cave. It turns out that the mtDNA sequences of Denisova 19 and 21 are identical, indicating that they may belong to the same individual or be maternal relatives.The divergence date for the mtDNAs of the three new and the four previously published Denisovans is 229 ka (206 - 252 ka 95% Cl) during the
Interglacial period An interglacial period (or alternatively interglacial, interglaciation) is a geological interval of warmer global average temperature lasting thousands of years that separates consecutive glacial periods within an ice age. The current Holocene in ...
MIS 7. The
genetic diversity Genetic diversity is the total number of genetic characteristics in the genetic makeup of a species. It ranges widely, from the number of species to differences within species, and can be correlated to the span of survival for a species. It is d ...
among the Denisovans from Denisova Cave is on the lower range of what is seen in modern humans, and is comparable to that of Neanderthals. However, it is possible that the inhabitants of Denisova Cave were more or less reproductively isolated from other Denisovans, and that, across their entire range, Denisovan genetic diversity may have been much higher. In 2024, scientists announced the sequence of Denisova 25, which was in a layer dated to 200 ka. During DNA sequencing, low proportions of the Denisova 2, Denisova 4 and Denisova 8 genomes were found to have survived, but high proportions of the Denisova 3 and Denisova 25 genomes were intact. The Denisova 3 sample was cut into two, and the initial DNA sequencing of one fragment was later independently confirmed by sequencing the mtDNA from the second. In 2008, a Taiwan citizen purchased a fossil ''Homo''
mandible In jawed vertebrates, the mandible (from the Latin ''mandibula'', 'for chewing'), lower jaw, or jawbone is a bone that makes up the lowerand typically more mobilecomponent of the mouth (the upper jaw being known as the maxilla). The jawbone i ...
, which had been dredged from the sea floor of the
Taiwan Strait The Taiwan Strait is a strait separating the island of Taiwan and the Asian continent. The strait is part of the South China Sea and connects to the East China Sea to the north. The narrowest part is wide. Names Former names of the Tai ...
, from an antique shop and donated it to the Taiwan
National Museum of Natural Science The National Museum of Natural Science () is a national museum in North District, Taichung, Taiwan. Overview The museum covers and is a six-venue complex housing: the Space Theater, Science Center, Life Science Hall, Human Cultures Hall, Gl ...
. Attempts to extract DNA were unsuccessful, but in 2025 protein analysis of the specimen, designated
Penghu 1 Penghu 1 is a fossil jaw (mandible) belonging to an extinct hominin species of the genus ''Homo.'' It was collected from seafloor sediments of the Penghu Channel off the coast of Taiwan, dating to sometime in the Middle Pleistocene or Late Pleis ...
, was published showing that it belonged to a male Denisovan. The find confirmed that Denisovans inhabited environments ranging from cold and arid to warm and humid. It was not possible to date the specimen, but it is younger than 450,000 years old, and probably either between 10,000 to 70,000 or 130,000 to 190,000 years ago, at a time when low sea levels meant that Taiwan was connected to mainland China. Known Denisova mandibles are more robust than Neanderthal ones, but as all the Denisova ones discovered so far are male, it is not certain whether this is a general Denisova characteristic or whether possible Denisova fossils with more gracile mandibles are females.


Evolution

Sequenced In genetics and biochemistry, sequencing means to determine the primary structure (sometimes incorrectly called the primary sequence) of an unbranched biopolymer. Sequencing results in a symbolic linear depiction known as a sequence which succi ...
mitochondrial DNA Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
(mtDNA), preserved by the cool climate of the cave (average temperature is at freezing point), was extracted from Denisova 3 by a team of scientists led by
Johannes Krause Johannes Krause (born July 17, 1980, in Leinefelde) is a German biochemist with a research focus on historical infectious diseases and human evolution. Since 2010, he has been professor of archaeology and paleogenetics at the University of Tübin ...
and
Svante Pääbo Svante Pääbo (; born 20 April 1955) is a Swedish geneticist and Nobel Laureate who specialises in the field of evolutionary genetics. As one of the founders of paleogenetics, he has worked extensively on the Neanderthal genome. In 1997, he ...
from the
Max Planck Institute for Evolutionary Anthropology The Max Planck Institute for Evolutionary Anthropology (, shortened to MPI EVA) is a research institute based in Leipzig, Germany, that was founded in 1997. It is part of the Max Planck Society network. Well-known scientists currently based at ...
in
Leipzig Leipzig (, ; ; Upper Saxon: ; ) is the most populous city in the States of Germany, German state of Saxony. The city has a population of 628,718 inhabitants as of 2023. It is the List of cities in Germany by population, eighth-largest city in Ge ...
, Germany. Denisova 3's mtDNA differs from that of modern humans by 385 bases (
nucleotide Nucleotides are Organic compound, organic molecules composed of a nitrogenous base, a pentose sugar and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both o ...
s) out of approximately 16,500, whereas the difference between modern humans and
Neanderthals Neanderthals ( ; ''Homo neanderthalensis'' or sometimes ''H. sapiens neanderthalensis'') are an extinction, extinct group of archaic humans who inhabited Europe and Western and Central Asia during the Middle Pleistocene, Middle to Late Plei ...
is around 202 bases. In comparison, the difference between
chimpanzee The chimpanzee (; ''Pan troglodytes''), also simply known as the chimp, is a species of Hominidae, great ape native to the forests and savannahs of tropical Africa. It has four confirmed subspecies and a fifth proposed one. When its close rel ...
s and modern humans is approximately 1,462 mtDNA base pairs. This suggested that Denisovan mtDNA diverged from that of modern humans and Neanderthals about 1,313,500–779,300 years ago; whereas modern human and Neanderthal mtDNA diverged 618,000–321,200 years ago. Krause and colleagues then concluded that Denisovans were the descendants of an earlier migration of ''H. erectus'' out of Africa, completely distinct from modern humans and Neanderthals. However, according to the
nuclear DNA Nuclear DNA (nDNA), or nuclear deoxyribonucleic acid, is the DNA contained within each cell nucleus of a eukaryotic organism. It encodes for the majority of the genome in eukaryotes, with mitochondrial DNA and plastid DNA coding for the rest. ...
(nDNA) of Denisova 3—which had an unusual degree of DNA preservation with only low-level contamination—Denisovans and Neanderthals were more closely related to each other than they were to modern humans. Using the percent distance from human–chimpanzee last common ancestor, Denisovans/Neanderthals split from modern humans about 804,000 years ago, and from each other 640,000 years ago. Using a mutation rate of or per
base pair A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA ...
(bp) per year, the Neanderthal/Denisovan split occurred around either 236–190,000 or 473–381,000 years ago respectively. Using per generation with a new generation every 29 years, the time is 744,000 years ago. Using
nucleotide Nucleotides are Organic compound, organic molecules composed of a nitrogenous base, a pentose sugar and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both o ...
site per year, it is 616,000 years ago. Using the latter dates, the split had likely already occurred by the time hominins spread out across Europe. '' H. heidelbergensis'' is typically considered to have been the direct ancestor of Denisovans and Neanderthals, and sometimes also modern humans. Due to the strong divergence in dental anatomy, they may have split before characteristic Neanderthal dentition evolved about 300,000 years ago. The more divergent Denisovan mtDNA has been interpreted as evidence of admixture between Denisovans and an unknown archaic human population, possibly a
relict A relict is a surviving remnant of a natural phenomenon. Biology A relict (or relic) is an organism that at an earlier time was abundant in a large area but now occurs at only one or a few small areas. Geology and geomorphology In geology, a r ...
''
H. erectus ''Homo erectus'' ( ) is an extinct species of archaic human from the Pleistocene, spanning nearly 2 million years. It is the first human species to evolve a humanlike body plan and gait, to leave Africa and colonize Asia and Europe, and to ...
'' or ''H. erectus''-like population about 53,000 years ago. Alternatively, divergent mtDNA could have also resulted from the persistence of an ancient mtDNA lineage which only went extinct in modern humans and Neanderthals through
genetic drift Genetic drift, also known as random genetic drift, allelic drift or the Wright effect, is the change in the Allele frequency, frequency of an existing gene variant (allele) in a population due to random chance. Genetic drift may cause gene va ...
. Modern humans contributed mtDNA to the Neanderthal lineage, but not to the Denisovan mitochondrial genomes yet sequenced. The mtDNA sequence from the femur of a 400,000-year-old ''H. heidelbergensis'' from the Sima de los Huesos Cave in Spain was found to be related to those of Neanderthals and Denisovans, but closer to Denisovans, and the authors posited that this mtDNA represents an archaic sequence which was subsequently lost in Neanderthals due to replacement by a modern-human-related sequence.


Demographics

Denisovans are known to have lived in Siberia, Tibet, Laos, and Taiwan. The Xiahe mandible is the earliest recorded human presence on the Tibetan Plateau. Though their remains have been identified in only these four locations, traces of Denisovan DNA in modern humans suggest they ranged across
East Asia East Asia is a geocultural region of Asia. It includes China, Japan, Mongolia, North Korea, South Korea, and Taiwan, plus two special administrative regions of China, Hong Kong and Macau. The economies of Economy of China, China, Economy of Ja ...
, and potentially western Eurasia. In 2019,
geneticist A geneticist is a biologist or physician who studies genetics, the science of genes, heredity, and variation of organisms. A geneticist can be employed as a scientist or a lecturer. Geneticists may perform general research on genetic process ...
Guy Jacobs and colleagues identified three distinct populations of Denisovans responsible for the introgression into modern populations now native to, respectively: Siberia and East Asia; New Guinea and nearby islands; and
Oceania Oceania ( , ) is a region, geographical region including Australasia, Melanesia, Micronesia, and Polynesia. Outside of the English-speaking world, Oceania is generally considered a continent, while Mainland Australia is regarded as its co ...
and, to a lesser extent, across Asia. Using coalescent modeling, the Denisova Cave Denisovans split from the second population about 283,000 years ago; and from the third population about 363,000 years ago. This indicates that there was considerable reproductive isolation between Denisovan populations. Using
exponential distribution In probability theory and statistics, the exponential distribution or negative exponential distribution is the probability distribution of the distance between events in a Poisson point process, i.e., a process in which events occur continuousl ...
analysis on
haplotype A haplotype (haploid genotype) is a group of alleles in an organism that are inherited together from a single parent. Many organisms contain genetic material (DNA) which is inherited from two parents. Normally these organisms have their DNA orga ...
lengths, Jacobs calculated
introgression Introgression, also known as introgressive hybridization, in genetics is the transfer of genetic material from one species into the gene pool of another by the repeated backcrossing of an interspecific hybrid with one of its parent species. Introg ...
into modern humans occurred about 29,900 years ago with the Denisovan population ancestral to New Guineans; and 45,700 years ago with the population ancestral to both New Guineans and Oceanians. Such a late date for the New Guinean group could indicate Denisovan survival as late as 14,500 years ago, which would make them the latest surviving archaic human species. A third wave appears to have introgressed into East Asia, but there is not enough DNA evidence to pinpoint a solid timeframe. In a 2024 study, scientist Danat Yermakovich, of the
University of Tartu The University of Tartu (UT; ; ) is a public research university located in the city of Tartu, Estonia. It is the national university of Estonia. It is also the largest and oldest university in the country.
, discovered that people living at different elevations in Papua New Guinea have differences in Denisovan DNA; with people living in the highlands having variants for early brain development and those living in the lowlands having variants for the immune system. Based on the high percentages of Denisovan DNA in modern Papuans and Australians, Denisovans may have crossed the
Wallace Line The Wallace Line or Wallace's Line is a faunal boundary line drawn in 1859 by the British naturalist Alfred Russel Wallace and named by the English biologist Thomas Henry Huxley. It separates the biogeographic realms of Asia and 'Wallacea', a ...
into these regions (with little back-migration west), the second known human species to do so, along with earlier ''
Homo floresiensis ''Homo floresiensis'' , also known as "Flores Man" or "Hobbit" (after Hobbit, the fictional species), is an Extinction, extinct species of small archaic humans that inhabited the island of Flores, Indonesia, until the arrival of Homo sapiens, ...
''. By this logic, they may have also entered the Philippines, living alongside '' H. luzonensis'' which, if this is the case, may represent the same or a closely related species. These Denisovans may have needed to cross large bodies of water. Alternately, high Denisovan DNA admixture in modern Papuan populations may simply represent higher mixing among the original ancestors of Papuans prior to crossing the Wallace line. Icelanders also have an anomalously high Denisovan heritage, which could have stemmed from a Denisovan population far west of the Altai Mountains. Genetic data suggests Neanderthals were frequently making long crossings between Europe and the Altai Mountains especially towards the date of their extinction. Denisova Cave, over time of habitation, continually swung from a fairly warm and moderately humid pine and birch forest to tundra or forest-tundra landscape. Conversely, Baishiya Karst Cave is situated at a high elevation, an area characterized by low temperature, low oxygen, and poor resource availability. Colonization of high-altitude regions, due to such harsh conditions, was previously assumed to have only been accomplished by modern humans. Denisovans seem to have also inhabited the jungles of Southeast Asia. The Tam Ngu Hao 2 site might have been a closed forest environment.


Anatomy

Little is known of the precise anatomical features of the Denisovans given how fragmentary identified remains are. The finger bone is within the modern human range of variation for women, which is in contrast to the large, robust molars which are more similar to those of Middle to Late Pleistocene archaic humans. The third molar is outside the range of any ''Homo'' species except '' H. habilis'' and ''
H. rudolfensis ''Homo rudolfensis'' is an extinct species of archaic human from the Early Pleistocene of East Africa about 2 million years ago (mya). Because ''H. rudolfensis'' coexisted with several other hominins, it is debated what specimens can be confide ...
'', and is more like those of
australopithecine The australopithecines (), formally Australopithecina or Hominina, are generally any species in the related genera of ''Australopithecus'' and ''Paranthropus''. It may also include members of '' Kenyanthropus'', ''Ardipithecus'', and '' Praeant ...
s. The second molar is larger than those of modern humans and Neanderthals, and is more similar to those of ''
H. erectus ''Homo erectus'' ( ) is an extinct species of archaic human from the Pleistocene, spanning nearly 2 million years. It is the first human species to evolve a humanlike body plan and gait, to leave Africa and colonize Asia and Europe, and to ...
'' and ''H. habilis''. Like Neanderthals, the mandible had a gap behind the molars, and the front teeth were flattened; but Denisovans lacked a high mandibular body, and the
mandibular symphysis In human anatomy, the facial skeleton of the skull the external surface of the mandible is marked in the median line by a faint ridge, indicating the mandibular symphysis (Latin: ''symphysis menti'') or line of junction where the two lateral ha ...
at the midline of the jaw was more receding. The parietal is reminiscent of that of ''H. erectus''. A facial reconstruction has been generated by comparing
methylation Methylation, in the chemistry, chemical sciences, is the addition of a methyl group on a substrate (chemistry), substrate, or the substitution of an atom (or group) by a methyl group. Methylation is a form of alkylation, with a methyl group replac ...
at individual genetic loci associated with facial structure. This analysis suggested that Denisovans, much like Neanderthals, had a long, broad, and projecting face; large nose; sloping forehead; protruding jaw; elongated and flattened skull; and wide chest and hips. The Denisovan
tooth row Sharks continually shed their teeth; some Carcharhiniformes shed approximately 35,000 teeth in a lifetime, replacing those that fall out. There are four basic types of shark teeth: dense flattened, needle-like, pointed lower with triangular upp ...
was longer than that of Neanderthals and anatomically modern humans. Middle-to-Late Pleistocene East Asian archaic human skullcaps typically share features with Neanderthals. The skullcaps from Xuchang feature prominent brow ridges like Neanderthals, though the nuchal and angular tori near the base of the skull are either reduced or absent, and the back of the skull is rounded off like in
early modern human Early modern human (EMH), or anatomically modern human (AMH), are terms used to distinguish ''Homo sapiens'' (Homo sapiens sapiens, sometimes ''Homo sapiens sapiens'') that are Human anatomy, anatomically consistent with the Human variability, r ...
s. Xuchang 1 had a large brain volume of approximately 1800 cc, on the high end for Neanderthals and early modern humans, and well beyond the present-day human average. The Denisovan genome from Denisova Cave has variants of genes which, in modern humans, are associated with dark skin, brown hair, and brown eyes. The Denisovan genome also contains a variant region around the
EPAS1 Endothelial PAS domain-containing protein 1 (EPAS1, also known as hypoxia-inducible factor-2alpha (HIF-2α)) is a protein that is encoded by the ''EPAS1'' gene in mammals. It is a type of hypoxia-inducible factor, a group of transcription factor ...
gene that in
Tibetans Tibetans () are an East Asian ethnic group native to Tibet. Their current population is estimated to be around 7.7 million. In addition to the majority living in the Tibet Autonomous Region of China, significant numbers of Tibetans live in t ...
assists with adaptation to low oxygen levels at high elevation, and in a region containing the
WARS2 Tryptophanyl-tRNA synthetase, mitochondrial is an enzyme that in humans is encoded by the ''WARS2'' gene. Function Aminoacyl-tRNA synthetases catalyze the aminoacylation of tRNA by their cognate amino acid. Because of their central role in li ...
and
TBX15 T-box transcription factor TBX15 is protein that is encoded in humans by the Tbx15 gene, mapped to Chromosome 3 in mice and Chromosome 1 in humans. Tbx15 is a transcription factor that plays a key role in embryonic development. Like other member ...
loci which affect body-fat distribution in the
Inuit Inuit (singular: Inuk) are a group of culturally and historically similar Indigenous peoples traditionally inhabiting the Arctic and Subarctic regions of North America and Russia, including Greenland, Labrador, Quebec, Nunavut, the Northwe ...
. In Papuans, introgressed Neanderthal alleles are highest in frequency in genes expressed in the brain, whereas Denisovan alleles have highest frequency in genes expressed in bones and other tissue.


Culture


Denisova Cave

Early
Middle Paleolithic The Middle Paleolithic (or Middle Palaeolithic) is the second subdivision of the Paleolithic or Old Stone Age as it is understood in Europe, Africa and Asia. The term Middle Stone Age is used as an equivalent or a synonym for the Middle P ...
stone tools from Denisova Cave included cores,
scraper Scrape, scraper or scraping may refer to: Biology and medicine * Abrasion (medical), a type of injury * Scraper (biology), grazer-scraper, a water animal that feeds on stones and other substrates by grazing algae, microorganism and other matter ...
s,
denticulate tool In archaeology, a denticulate tool is a stone tool containing one or more edges that are worked into multiple notched shapes (or teeth), much like the toothed edge of a saw. Such tools have been used as saws for woodworking, processing meat and ...
s, and notched tools, deposited about 287±41 thousand years ago in the Main Chamber of the cave; and about 269±97 thousand years ago in the South Chamber; up to 170±19 thousand and 187±14 thousand years ago in the Main and East Chambers, respectively. Middle Paleolithic assemblages were dominated by flat, discoidal, and Levallois cores, and there were some isolated sub-prismatic cores. There were predominantly side scrapers (a scraper with only the sides used to scrape), but also notched-denticulate tools, end-scrapers (a scraper with only the ends used to scrape), burins,
chisel A chisel is a hand tool with a characteristic Wedge, wedge-shaped cutting edge on the end of its blade. A chisel is useful for carving or cutting a hard material such as woodworking, wood, lapidary, stone, or metalworking, metal. Using a chi ...
-like tools, and truncated flakes. These dated to 156±15 thousand years ago in the Main Chamber, 58±6 thousand years ago in the East Chamber, and 136±26–47±8 thousand years ago in the South Chamber. Early
Upper Paleolithic The Upper Paleolithic (or Upper Palaeolithic) is the third and last subdivision of the Paleolithic or Old Stone Age. Very broadly, it dates to between 50,000 and 12,000 years ago (the beginning of the Holocene), according to some theories ...
artefacts date to 44±5 thousand years ago in the Main Chamber, 63±6 thousand years ago in the East Chamber, and 47±8 thousand years ago in the South Chamber, though some layers of the East Chamber seem to have been disturbed. There was
blade A blade is the Sharpness (cutting), sharp, cutting portion of a tool, weapon, or machine, specifically designed to puncture, chop, slice, or scrape surfaces or materials. Blades are typically made from materials that are harder than those they a ...
production and Levallois production, but scrapers were again predominant. A well-developed, Upper Paleolithic stone bladelet technology distinct from the previous scrapers began accumulating in the Main Chamber around 36±4 thousand years ago. In the Upper Paleolithic layers, there were also several
bone tool In archaeology, bone tools have been documented from the advent of ''Homo sapiens'' and are also known from ''Homo neanderthalensis'' contexts or even earlier. Bone has been used for making tools by virtually all hunter-gatherer societies, even w ...
s and ornaments: a
marble Marble is a metamorphic rock consisting of carbonate minerals (most commonly calcite (CaCO3) or Dolomite (mineral), dolomite (CaMg(CO3)2) that have recrystallized under the influence of heat and pressure. It has a crystalline texture, and is ty ...
ring, an ivory ring, an ivory pendant, a
red deer The red deer (''Cervus elaphus'') is one of the largest deer species. A male red deer is called a stag or Hart (deer), hart, and a female is called a doe or hind. The red deer inhabits most of Europe, the Caucasus Mountains region, Anatolia, Ir ...
tooth pendant, an
elk The elk (: ''elk'' or ''elks''; ''Cervus canadensis'') or wapiti, is the second largest species within the deer family, Cervidae, and one of the largest terrestrial mammals in its native range of North America and Central and East Asia. ...
tooth pendant, a chloritolite bracelet, and a bone needle. However, Denisovans are only confirmed to have inhabited the cave until 55 ka; the dating of Upper Paleolithic artefacts overlaps with modern human migration into Siberia (though there are no occurrences in the Altai region); and the DNA of the only specimen in the cave dating to the time interval (Denisova 14) is too degraded to confirm species identity, so the attribution of these artefacts is unclear.


Tibet

The inhabitants of Baishiya Karst Cave seem to have been extensively processing goat antelopes, cows, deer, horses, and
woolly rhinoceros The woolly rhinoceros (''Coelodonta antiquitatis'') is an extinct species of rhinoceros that inhabited northern Eurasia during the Pleistocene epoch. The woolly rhinoceros was a member of the Pleistocene megafauna. The woolly rhinoceros was larg ...
. They were also butchering large carnivores ( cave hyena, dog, and big cat),
marmot Marmots are large ground squirrels in the genus ''Marmota'', with 15 species living in Asia, Europe, and North America. These herbivores are active during the summer, when they can often be found in groups, but are not seen during the winter, w ...
s,
hare Hares and jackrabbits are mammals belonging to the genus ''Lepus''. They are herbivores and live Solitary animal, solitarily or in pairs. They nest in slight depressions called forms, and their young are precociality, able to fend for themselves ...
, and
eagle Eagle is the common name for the golden eagle, bald eagle, and other birds of prey in the family of the Accipitridae. Eagles belong to several groups of Genus, genera, some of which are closely related. True eagles comprise the genus ''Aquila ( ...
s. They may have also used these animals'
long bone The long bones are those that are longer than they are wide. They are one of five types of bones: long, short, flat, irregular and sesamoid. Long bones, especially the femur and tibia, are subjected to most of the load during daily activities ...
s to make bone tools, and additionally there are stone artefacts in each layer excavated. In 1998, five child hand- and footprint impressions were discovered in a
travertine Travertine ( ) is a form of terrestrial limestone deposited around mineral springs, especially hot springs. It often has a fibrous or concentric appearance and exists in white, tan, cream-colored, and rusty varieties. It is formed by a process ...
unit Unit may refer to: General measurement * Unit of measurement, a definite magnitude of a physical quantity, defined and adopted by convention or by law **International System of Units (SI), modern form of the metric system **English units, histo ...
near the Quesang
hot spring A hot spring, hydrothermal spring, or geothermal spring is a Spring (hydrology), spring produced by the emergence of Geothermal activity, geothermally heated groundwater onto the surface of the Earth. The groundwater is heated either by shallow ...
s in Tibet; in 2021, they were dated to 226 to 169 thousand years ago using uranium decay dating. This is the oldest evidence of human occupation of the Tibetan Plateau, and since the Xiahe mandible is the oldest human fossil from the region (though younger than the Quesang impressions), these may have been made by Denisovan children. The impressions were printed onto a small panel of space, and there is little overlap between all the prints, so they seem to have been taking care to make new imprints in unused space. If considered art, they are the oldest known examples of
rock art In archaeology, rock arts are human-made markings placed on natural surfaces, typically vertical stone surfaces. A high proportion of surviving historic and prehistoric rock art is found in caves or partly enclosed rock shelters; this type al ...
. Similar hand stencils and impressions do not appear again in the archeological record until roughly 40,000 years ago. The footprints comprise four right impressions and one left superimposed on one of the rights. They were probably left by two individuals. The tracks of the individual who superimposed their left onto their right may have scrunched up their toes and wiggled them in the mud, or dug their finger into the toe prints. The footprints average long, which roughly equates to a 7 or 8 year old child by modern human growth rates. There are two sets of handprints (from a left and right hand), which may have been created by an older child unless one of the former two individuals had long fingers. The handprints average , which roughly equates with a 12 year old modern human child, and the middle finger length agrees with a 17 year old modern human. One of the handprints shows an impression of the forearm, and the individual was wiggling their thumb through the mud.


Interbreeding

Analyses of the modern human genomes indicate past interbreeding with at least two groups of archaic humans, Neanderthals and Denisovans, and that such interbreeding events occurred on multiple occasions. Comparisons of the Denisovan, Neanderthal, and modern human genomes have revealed evidence of a complex web of interbreeding among these lineages.


Archaic humans

As much as 17% of the Denisovan genome from Denisova Cave represents DNA from the local Neanderthal population. Denisova 11 was an F1 (first generation) Denisovan/Neanderthal hybrid; the fact that such an individual was found may indicate interbreeding was a common occurrence here. The Denisovan genome shares more derived alleles with the Altai Neanderthal genome from Siberia than with the
Vindija Cave Vindija Cave is an archaeological site associated with Neanderthals and modern humans, located in the municipality of Donja Voća, northern Croatia. Remains of three Neanderthals were selected as the primary sources for the first draft sequence ...
Neanderthal genome from Croatia or the Mezmaiskaya cave Neanderthal genome from the Caucasus, suggesting that the gene flow came from a population that was more closely related to the local Altai Neanderthals. However, Denny's Denisovan father had the typical Altai Neanderthal
introgression Introgression, also known as introgressive hybridization, in genetics is the transfer of genetic material from one species into the gene pool of another by the repeated backcrossing of an interspecific hybrid with one of its parent species. Introg ...
, while her Neanderthal mother represented a population more closely related to Vindija Neanderthals. Denisova 25, dated to 200ka, is estimated to have inherited 5% of his genome from a previously unknown population of Neanderthals, and came from a different population of Denisovans than the younger samples. About 4% of the Denisovan genome derives from an unidentified archaic hominin, perhaps the source of the anomalous ancient mtDNA, indicating this species diverged from Neanderthals and humans over a million years ago. The only identified ''Homo'' species of
Late Pleistocene The Late Pleistocene is an unofficial Age (geology), age in the international geologic timescale in chronostratigraphy, also known as the Upper Pleistocene from a Stratigraphy, stratigraphic perspective. It is intended to be the fourth division ...
Asia are ''H. erectus'' and ''H. heidelbergensis'', though in 2021, specimens allocated to the latter species were reclassified as ''
H. longi ''Homo longi'' is an extinct species of archaic human identified from a nearly complete skull, nicknamed 'Dragon Man', from Harbin on the Northeast China Plain, dating to at minimum 146,000 years ago during the Middle Pleistocene. The skull was d ...
'' and '' H. daliensis''. Before splitting from Neanderthals, their ancestors ("Neandersovans") migrating into Europe apparently interbred with an unidentified "superarchaic" human species who were already present there; these superarchaics were the descendants of a very early migration out of Africa around 1.9 mya.


Modern humans

A 2011 study found that Denisovan DNA is present at a comparatively high level in
Papuans Papuans may refer to: * Indonesian Papuans – the Native Indonesians of Papua-origin * Papua New Guineans – the nationals of Papua New Guinea * Indigenous people of New Guinea The indigenous peoples of Western New Guinea in Indonesia and Pap ...
,
Aboriginal Australians Aboriginal Australians are the various indigenous peoples of the Mainland Australia, Australian mainland and many of its islands, excluding the ethnically distinct people of the Torres Strait Islands. Humans first migrated to Australia (co ...
,
Near Oceania Near Oceania is the part of Oceania that features greater biodiversity, due to the islands and atolls being closer to each other. The distinction of Near Oceania and Remote Oceania was first suggested by Pawley & Green (1973) and was further el ...
ns,
Polynesians Polynesians are an ethnolinguistic group comprising closely related ethnic groups native to Polynesia, which encompasses the islands within the Polynesian Triangle in the Pacific Ocean. They trace their early prehistoric origins to Island Sout ...
,
Fijians Fijians () are a nation and ethnic group Indigenous peoples of Oceania, native to Fiji, who speak Fijian language, Fijian and English language, English and share a common history and culture. Fijians, or ''iTaukei'', are the major indigenous ...
, Eastern
Indonesians Indonesians (Indonesian language, Indonesian: ''orang Indonesia'') are citizens or people who are identified with the country of Indonesia, regardless of their ethnic or religious background. There are more than Ethnic groups in Indonesia, 1,300 ...
, and
Aeta Aeta (Ayta ), Agta and Dumagat, are collective terms for several indigenous peoples who live in various parts of Luzon islands in the Philippines. They are included in the wider Negrito grouping of the Philippines and the rest of Southeast A ...
(from the Philippines); but not in
East Asians East Asian people (also East Asians) are the people from East Asia, which consists of China, Japan, Mongolia, North Korea, South Korea, and Taiwan. The total population of all countries within this region is estimated to be 1.677 billion and 21% ...
, western Indonesians,
Jahai people The Jahai or Jehai people are an indigenous people (Orang Asli) of the Semang people group found in Perak and Kelantan, Malaysia and parts of Thailand. They are hunter-gatherers and they occasionally practice swidden agriculture. The Jahai peop ...
(from Malaysia), or
Onge The Onge (also Önge, Ongee, and Öñge) are an Andamanese ethnic group, indigenous to the Andaman Islands in Southeast Asia at the Bay of Bengal, India. They are traditionally hunter-gatherers and fishers, but also practice plant cultivatio ...
(from the
Andaman Islands The Andaman Islands () are an archipelago, made up of 200 islands, in the northeastern Indian Ocean about southwest off the coasts of Myanmar's Ayeyarwady Region. Together with the Nicobar Islands to their south, the Andamans serve as a mari ...
). This may suggest that Denisovan introgression occurred within the Pacific region rather than on the Asian mainland, and that ancestors of the latter groups were not present in Southeast Asia at the time. In the Melanesian genome, about 4–6% or 1.9–3.4% derives from Denisovan introgression. Prior to 2021, New Guineans and Australian Aborigines were reported to have the most introgressed DNA, but Australians have less than New Guineans. A 2021 study discovered 30 to 40% more Denisovan ancestry in
Aeta people Aeta (Ayta ), Agta and Dumagat, are collective terms for several indigenous peoples who live in various parts of Luzon islands in the Philippines. They are included in the wider Negrito grouping of the Philippines and the rest of Southeast A ...
in the Philippines than in
Papuans Papuans may refer to: * Indonesian Papuans – the Native Indonesians of Papua-origin * Papua New Guineans – the nationals of Papua New Guinea * Indigenous people of New Guinea The indigenous peoples of Western New Guinea in Indonesia and Pap ...
, estimated as about 5% of the genome. The Aeta Magbukon in Luzon have the highest known proportion of Denisovan ancestry of any population in the world. In Papuans, less Denisovan ancestry is seen in the
X chromosome The X chromosome is one of the two sex chromosomes in many organisms, including mammals, and is found in both males and females. It is a part of the XY sex-determination system and XO sex-determination system. The X chromosome was named for its u ...
than
autosomes An autosome is any chromosome that is not a sex chromosome. The members of an autosome pair in a diploid cell have the same morphology, unlike those in allosomal (sex chromosome) pairs, which may have different structures. The DNA in autosomes i ...
, and some autosomes (such as
chromosome 11 Chromosome 11 is one of the 23 pairs of chromosomes in humans. Humans normally have two copies of this chromosome. Chromosome 11 spans about 135 million base pairs (the building material of DNA) and represents between 4 and 4.5 percent of the tota ...
) also have less Denisovan ancestry, which could indicate hybrid incompatibility. The former observation could also be explained by less female Denisovan introgression into modern humans, or more female modern human immigrants who diluted Denisovan X chromosome ancestry. In contrast, 0.2% derives from Denisovan ancestry in mainland Asians and
Native American Native Americans or Native American usually refers to Native Americans in the United States. Related terms and peoples include: Ethnic groups * Indigenous peoples of the Americas, the pre-Columbian peoples of North, South, and Central America ...
s.
South Asians Ethnic groups in South Asia are ethnolinguistic groupings within the diverse populations of South Asia, including the countries of Bangladesh, Bhutan, India, Maldives, Nepal, Pakistan, and Sri Lanka. Afghanistan is variously considered to be a p ...
were found to have levels of Denisovan admixture similar to that seen in East Asians. The discovery of the 40,000-year-old Chinese modern human
Tianyuan Man Tianyuan man ( zh, t=田園洞人, s=田园洞人, p=Tiányuándòng Rén) are the remains of one of the earliest modern humans to inhabit East Asia. In 2007, researchers found 34 bone fragments belonging to a single individual at the Tianyuan ...
lacking Denisovan DNA significantly different from the levels in modern-day East Asians discounts the hypothesis that immigrating modern humans simply diluted Denisovan ancestry whereas Melanesians lived in reproductive isolation. A 2018 study of Han Chinese,
Japanese Japanese may refer to: * Something from or related to Japan, an island country in East Asia * Japanese language, spoken mainly in Japan * Japanese people, the ethnic group that identifies with Japan through ancestry or culture ** Japanese diaspor ...
, and Dai genomes showed that modern East Asians have DNA from two different Denisovan populations: one similar to the Denisovan DNA found in Papuan genomes, and a second that is closer to the Denisovan genome from Denisova Cave. This could indicate two separate introgression events involving two different Denisovan populations. In South Asian genomes, DNA only came from the same single Denisovan introgression seen in Papuans. A 2019 study found a third wave of Denisovans which introgressed into East Asians. Introgression, also, may not have immediately occurred when modern humans immigrated into the region. The timing of introgression into Oceanian populations likely occurred after Eurasians and Oceanians split roughly 58,000 years ago, and before Papuan and Aboriginal Australians split from each other roughly 37,000 years ago. Given the present day distribution of Denisovan DNA, this may have taken place in Wallacea, though the discovery of a 7,200 year old Toalean girl (closely related to Papuans and Aboriginal Australians) from Sulawesi carrying Denisovan DNA makes Sundaland another potential candidate. Other early Sunda hunter gatherers so far sequenced carry very little Denisovan DNA, which either means the introgression event did not take place in Sundaland, or Denisovan ancestry was diluted with gene flow from the mainland Asian Hòabìnhian culture and subsequent
Neolithic The Neolithic or New Stone Age (from Ancient Greek, Greek 'new' and 'stone') is an archaeological period, the final division of the Stone Age in Mesopotamia, Asia, Europe and Africa (c. 10,000 BCE to c. 2,000 BCE). It saw the Neolithic Revo ...
cultures. In other regions of the world, archaic introgression into humans stems from a group of Neanderthals related to those which inhabited
Vindija Cave Vindija Cave is an archaeological site associated with Neanderthals and modern humans, located in the municipality of Donja Voća, northern Croatia. Remains of three Neanderthals were selected as the primary sources for the first draft sequence ...
, Croatia, as opposed to archaics related to Siberian Neanderthals and Denisovans. However, about 3.3% of the archaic DNA in the modern Icelandic genome descends from the Denisovans, and such a high percentage could indicate a western Eurasian population of Denisovans which introgressed into either Vindija-related Neanderthals or immigrating modern humans. A haplotype of EPAS1 in modern Tibetans, which allows them to live at high elevations in a low-oxygen environment, likely came from Denisovans. Genes related to
phospholipid Phospholipids are a class of lipids whose molecule has a hydrophilic "head" containing a phosphate group and two hydrophobic "tails" derived from fatty acids, joined by an alcohol residue (usually a glycerol molecule). Marine phospholipids typ ...
transporters (which are involved in fat metabolism) and to
trace amine-associated receptor Trace amine-associated receptors (TAARs), sometimes referred to as trace amine receptors (TAs or TARs), are a class of G protein-coupled receptors that were discovered in 2001. TAAR1, the first of six functional human TAARs, has gained considerab ...
s (involved in smelling) are more active in people with more Denisovan ancestry. Denisovan genes may have conferred a degree of immunity against the G614 mutation of
SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19, the respiratory illness responsible for the COVID-19 pandemic. The virus previously had the Novel coronavirus, provisional nam ...
. Denisovan introgressions may have influenced the immune system of present-day Papuans and potentially favoured "variants to immune-related phenotypes" and "adaptation to the local environment". In December 2023, scientists reported that
gene In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protei ...
s inherited by
modern human Humans (''Homo sapiens'') or modern humans are the most common and widespread species of primate, and the last surviving species of the genus ''Homo''. They are Hominidae, great apes characterized by their Prehistory of nakedness and clothing ...
s from
Neanderthal Neanderthals ( ; ''Homo neanderthalensis'' or sometimes ''H. sapiens neanderthalensis'') are an extinction, extinct group of archaic humans who inhabited Europe and Western and Central Asia during the Middle Pleistocene, Middle to Late Plei ...
s and Denisovans may biologically influence the daily routine of modern humans.


See also

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References


Further reading

*


External links

*
The Denisova Consortium's raw sequence data and alignments

Human Timeline (Interactive)
Smithsonian,
National Museum of Natural History The National Museum of Natural History (NMNH) is a natural history museum administered by the Smithsonian Institution, located on the National Mall in Washington, D.C., United States. It has free admission and is open 364 days a year. With 4.4 ...
(August 2016).
Picture of Denisovan molar.
{{Prehistoric technology Homo fossils Human populations Altai Krai Prehistoric Asia Paleolithic Institute of Archaeology and Ethnography SB RAS