The Genomes OnLine Database (GOLD) is a web-based resource for comprehensive information regarding

genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ...

and

metagenome Metagenomics is the study of genetic material recovered directly from environmental or clinical samples by a method called sequencing. The broad field may also be referred to as environmental genomics, ecogenomics, community genomics or micro ...

sequencing projects, and their associated metadata, around the world. Since 2011, the GOLD database has been run by the DOE Joint Genome Institute The GOLD database was created in 1997; the first version of the database contained information for 350 sequencing projects, of which 48 had been completely sequenced with their analyses published. GOLD v.5 was released on 28 May 2014. , the GOLD database contains information for 67,879

genome sequencing Whole genome sequencing (WGS), also known as full genome sequencing, complete genome sequencing, or entire genome sequencing, is the process of determining the entirety, or nearly the entirety, of the DNA sequence of an organism's genome at a ...

projects, of which 7,210 have been completed. In order to facilitate comparative analysis between the information in GOLD and other databases (for example,

GenBank The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part ...

and the

EMBL The European Molecular Biology Laboratory (EMBL) is an intergovernmental organization dedicated to molecular biology research and is supported by 27 member states, two prospect states, and one associate member state. EMBL was created in 1974 and ...

), GOLD supports the minimum information standards metadata specifications recommended by the

Genomic Standards Consortium The Genomic Standards Consortium (GSC) is an initiative working towards richer descriptions of our collection of genomes, metagenomes and marker genes. Established in September 2005, this international community includes representatives from a ran ...

, in particular, the MIxS (Minimum Information about any (x) Sequence) specification. GOLD also allows the annotation of genomes or metagenomes using the DOE JGI

Integrated Microbial Genomes System The Integrated Microbial GenomesIMG system is a genome browsing and annotation platform developed by the U.S. Department of Energy (DOE)- Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI i ...

and has links to the

BioMed Central BioMed Central (BMC) is a United Kingdom-based, for-profit scientific open access publisher that produces over 250 scientific journals. All its journals are published online only. BioMed Central describes itself as the first and largest open a ...

journal ''Standards in Genomic Sciences'', allowing (meta)genomic data to be published.

References

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External links

GOLD

NCBI BioProject
Genome projects Genome databases Online databases

See also

References

External links