DmX Gene

Rabconnectin-3A (''Rbcn-3A'') or DmX (''Drosophila melanogaster'' X-gene) is a gene located on the X chromosome in ''Drosophila'' and encodes for the relatively large WD-repeat protein, rabconnectin-3A.Kraemer, Christiane; Weil, Bernd; Christmann, Markus; Schmidt, Erwin R. (1998-08-31)
"The new gene DmX from Drosophila melanogaster encodes a novel WD-repeat protein"
''Gene'' 216 (2): 267-276. https://doi.org/10.1016/S0378-1119(98)00347-3 Rabconnectin-3A is involved in Notch signalling by regulating the vacuolar proton pump V-ATPase. ''DmX'' is a highly conserved gene and is widely found in insects and mammals. Two orthologs of ''DmX'' exist in humans, '' DMXL1'' and ''DMXL2'', the latter of which codes for the synaptic protein rabconnectin-3α. Its name comes from the fact that it binds the Ras-related protein Rab3 (human RAB3A).

Discovery

The discovery of ''DmX'' was published in the journal ''Gene'' in 1998. It was discovered using a comparative genomics approach that found sequence homology to ''CpY'', a gene found in the sex determining region of the Y chromosome of the hoverfly '' C. piger.''

Gene

''DmX'' is located in region 5D5/6-E1 of the X chromosome in ''Drosophila''. The gene is approximately 16 kb long. It includes 15 exons which make up a transcript with a length of 11.5 kb. ''DmX'' has a relatively small promoter region that is likely shorter than 200 bp, leaving little space for regulatory elements. It was suggested that regulatory elements may be present within the first intron which is unusually large at more than 2.4 kb long.

Expression

The transcript for ''DmX'' was found in ''Drosophila'' embryos, larvae, and adults in both males and females, indicating that the gene is expressed in all developmental stages of ''Drosophila'' and does not have sex-specific expression. Although ''DmX'' was discovered as a homologue for ''CpY'', a gene involved in sex-determination, it does not appear to play a role in sex-determination in ''Drosophila'', as indicated by its non-sex-specific expression.

Protein

''DmX'' encodes for the relatively large protein rabconnectin-3A, which consists of 3427 amino acids and has a molecular weight of approximately 380 kDa. Rabconnectin-3A belongs to the superfamily of WD-repeat proteins which consists of mainly regulatory proteins involved in a variety of cellular processes. All WD-repeat proteins contain a moderately conserved WD-repeat motif that consists of approximately 40 amino acids ending with a tryptophan-aspartate (WD) dipeptide. The motif is likely responsible for protein-protein interactions. In most WD-repeat proteins the motif is repeated four to eight times. ''DmX'' has an unusually high repetition of the WD-repeat motif at approximately 30 repeats. It has been suggested that ''DmX'' may be a member of a novel class of WD-repeat proteins which contain significantly more motif repeats.

Role in Notch Signalling

Rabconnectin-3A forms a stable complex with rabconnectin-3B. The rabconnectin-3 complex is involved in regulating Notch signalling, although its exact function is unclear. Notch signalling is an important pathway involved in cell-cell communication. The pathway regulates the proliferation, differentiation, and death of cells. Signals are transduced by the cell-surface receptor Notch. During Notch synthesis there are three independent cleavage events. The third cleavage event in Notch synthesis is carried out by γ-secretase. This process requires the proton pump V-ATPase which is regulated by the rabconnectin-3 complex. When Rbcn-3A or Rbcn-3B are absent, Notch synthesis is disrupted between the second and third cleavage events, and Notch is subsequently prevented from entering the nucleus.

Orthologs

Orthologs of ''DmX'' exist in a wide variety of species including ''C. elegans'', yeast, mice, and humans. In zebrafish, rabconnectin-3a is involved in neural crest migration by playing a role in endosomal maturation in neural crest cells. The ''DmX'' ortholog in yeast is ''RAV1''. Rav1 is one of three subunits which make up the RAVE complex which is involved in V-ATPase assembly.

Human

Two orthologs for the ''DmX'' gene have been discovered in humans, ''DMXL1'' and ''DMXL2''. The duplication event that resulted in the two homologues likely occurred in early vertebrates.

''DMXL1''

''DMXL1'' is located on chromosome 5 and codes for a large WD-repeat protein consisting of 3027 amino acids and approximately 28 WD-repeat units. It is expressed in a number of different tissues. Its function is unknown. In a paper published in 2011, mutations occurring in ''DMXL1'' were linked to tumour growth.

''DMXL2''

''DMXL2'' is located on chromosome 15 and encodes the synaptic protein rabconnectin-3α. ''DMXL2'' plays a role in puberty and is a regulator of Notch signalling. Haploinsufficiency of ''DMXL2'' causes delayed puberty, reduced fertility, and abnormal glucose metabolism. A study published in 2015 identified ''DMXL2'' as a biomarker for ERα positive breast cancer. ''DMXL2'' has also been linked to hearing loss, suggesting that it is involved in inner ear functioning.{{cite journal , vauthors = Chen DY, Liu XF, Lin XJ, Zhang D, Chai YC, Yu DH, Sun CL, Wang XL, Zhu WD, Chen Y, Sun LH, Wang XW, Shi FX, Huang ZW, Yang T, Wu H , display-authors = 6 , title = A dominant variant in DMXL2 is linked to nonsyndromic hearing loss , language = En , journal = Genetics in Medicine , volume = 19 , issue = 5 , pages = 553–558 , date = May 2017 , pmid = 27657680 , doi = 10.1038/gim.2016.142 , doi-access = free

References

Drosophila melanogaster genes