''Dechloromonas agitata'' strain CKB is a dissimilatory

perchlorate A perchlorate is a chemical compound containing the perchlorate ion, , the conjugate base of perchloric acid (ionic perchlorate). As counterions, there can be metal cations, quaternary ammonium cations or other ions, for example, nitronium cat ...

reducing

bacterium Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the ...

(DRPB) that was isolated from paper mill waste. Strain CKB is a Gram negative,

facultative anaerobe A facultative anaerobic organism is an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation if oxygen is absent. Some examples of facultatively anaerobic bacteria are ''Staphylococcus' ...

belonging to the

Betaproteobacteria ''Betaproteobacteria'' are a class of Gram-negative bacteria, and one of the six classes of the phylum '' Pseudomonadota'' (synonym Proteobacteria). Metabolism The ''Betaproteobacteria'' comprise over 75 genera and 400 species. Together, they ...

. The

cell Cell most often refers to: * Cell (biology), the functional basic unit of life * Cellphone, a phone connected to a cellular network * Clandestine cell, a penetration-resistant form of a secret or outlawed organization * Electrochemical cell, a de ...

s of strain CKB are highly

motile Motility is the ability of an organism to move independently using metabolic energy. This biological concept encompasses movement at various levels, from whole organisms to cells and subcellular components. Motility is observed in animals, mi ...

and possess a single polar

flagellum A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many pr ...

. ''D. agitata'' can couple the

oxidation Redox ( , , reduction–oxidation or oxidation–reduction) is a type of chemical reaction in which the oxidation states of the reactants change. Oxidation is the loss of electrons or an increase in the oxidation state, while reduction is ...

of several

electron donor In chemistry, an electron donor is a chemical entity that transfers electrons to another compound. It is a reducing agent that, by virtue of its donating electrons, is itself oxidized in the process. An obsolete definition equated an electron dono ...

s such as

acetate An acetate is a salt formed by the combination of acetic acid with a base (e.g. alkaline, earthy, metallic, nonmetallic, or radical base). "Acetate" also describes the conjugate base or ion (specifically, the negatively charged ion called ...

, propionate,

butyrate The conjugate acids are in :Carboxylic acids. {{Commons category, Carboxylate ions, Carboxylate anions Carbon compounds Anions ...

, lactate,

succinate Succinic acid () is a dicarboxylic acid with the chemical formula (CH2)2(CO2H)2. In living organisms, succinic acid takes the form of an anion, succinate, which has multiple biological roles as a metabolic intermediate being converted into Fuma ...

fumarate Fumaric acid or ''trans''-butenedioic acid is an organic compound with the formula HO2CCH=CHCO2H. A white solid, fumaric acid occurs widely in nature. It has a fruit-like taste and has been used as a food additive. Its E number is E297. The sa ...

malate Malic acid is an organic compound with the molecular formula . It is a dicarboxylic acid that is made by all living organisms, contributes to the sour taste of fruits, and is used as a food additive. Malic acid has two stereoisomeric forms ( ...

yeast extract Yeast extracts consist of the cell contents of yeast without the cell walls; they are used as food additives or flavorings, or as nutrients for bacterial culture Growing media, media. They are often used to create savoury flavors and umami tast ...

to electron acceptors such as

oxygen Oxygen is a chemical element; it has chemical symbol, symbol O and atomic number 8. It is a member of the chalcogen group (periodic table), group in the periodic table, a highly reactivity (chemistry), reactive nonmetal (chemistry), non ...

chlorate Chlorate is the common name of the anion, whose chlorine atom is in the +5 oxidation state. The term can also refer to chemical compounds containing this anion, with Chlorate#Compounds (salts), chlorates being the salt (chemistry), salts of chlo ...

ferrous iron In chemistry, iron(II) refers to the element iron in its +2 oxidation state. The adjective ''ferrous'' or the prefix ''ferro-'' is often used to specify such compounds, as in ''ferrous chloride'' for iron(II) chloride (). The adjective ''ferr ...

sulfide Sulfide (also sulphide in British English) is an inorganic anion of sulfur with the chemical formula S2− or a compound containing one or more S2− ions. Solutions of sulfide salts are corrosive. ''Sulfide'' also refers to large families o ...

, and reduced

humic Humic substances (HS) are colored relatively recalcitrant organic compounds naturally formed during long-term decomposition and transformation of biomass residues. The color of humic substances varies from bright yellow to light or dark brown lead ...

substances like 2,6-anthrahydroquinone disulfonate. Unlike other perchlorate reducers, strain CKB cannot grow by nitrate reduction, which suggests that the pathways of nitrate and perchlorate reduction are distinct and unrelated, contrary to what previous research had shown.

Biological perchlorate reduction by strain CKB

Strain CKB can reduce chlorate and perchlorate (collectively known as (per)chlorate) completely to

chloride The term chloride refers to a compound or molecule that contains either a chlorine anion (), which is a negatively charged chlorine atom, or a non-charged chlorine atom covalently bonded to the rest of the molecule by a single bond (). The pr ...

. The first step of the pathway involves the reduction of (per)chlorate to

chlorite The chlorite ion, or chlorine dioxide anion, is the halite (oxyanion), halite with the chemical formula of . A chlorite (compound) is a compound that contains this group, with chlorine in the oxidation state of +3. Chlorites are also known as s ...

via the perchlorate reductase (Pcr)

enzyme An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different mol ...

. Chlorite is then dismutated to molecular oxygen and chloride by the chlorite dismutase (Cld) enzyme. The produced oxygen can then be reduced to water by action of the enzyme cytochrome oxidase. The Cld enzyme, encoded by an 834 bp

gene In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protei ...

, is 277 amino acids long and includes a 26 amino acid leader peptide. Though expressed at basal levels under aerobic conditions, the cld gene was transcriptionally upregulated when strain CKB cells were grown in (per)chlorate. The Cld enzyme is of particular interest not only because it protects cells from toxic chlorite, but also because it is one of only a handful of systems capable of producing molecular oxygen.

References

* *

External links

Type strain of ''Dechloromonas agitata'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
Rhodocyclaceae Infraspecific bacteria taxa {{Betaproteobacteria-stub