Cryptophaea (lichen)
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''Cryptophaea'' is a
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of
lichen A lichen ( , ) is a hybrid colony (biology), colony of algae or cyanobacteria living symbiotically among hypha, filaments of multiple fungus species, along with yeasts and bacteria embedded in the cortex or "skin", in a mutualism (biology), m ...
-forming
fungi A fungus (: fungi , , , or ; or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and mold (fungus), molds, as well as the more familiar mushrooms. These organisms are classified as one ...
in the family
Arthoniaceae The Arthoniaceae are a family (biology), family of lichenized, Lichenicolous fungus, lichenicolous and saprobic fungi in the order Arthoniales. The Arthoniaceae is the largest family of Arthoniales, with around 800 species. Most species in Arthon ...
. Initially described as a
monotypic In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unisp ...
genus in 2016 with the
type species In International_Code_of_Zoological_Nomenclature, zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the spe ...
, '' C. phaeospora'', from the
Congo Basin The Congo Basin () is the sedimentary basin of the Congo River. The Congo Basin is located in Central Africa, in a region known as west equatorial Africa. The Congo Basin region is sometimes known simply as the Congo. It contains some of the larg ...
, it was expanded in 2024 to include four species of
crustose lichen Crustose lichens are lichens that form a crust which strongly adheres to the Substrate (biology), substrate (soil, rock, tree bark, etc.), making separation from the substrate impossible without destruction. The basic structure of crustose lichen ...
s found in Brazil. ''Cryptophaea'' species are characterised by their firmly attached
thalli Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
, which are typically whitish grey-green and
hydrophobic In chemistry, hydrophobicity is the chemical property of a molecule (called a hydrophobe) that is seemingly repelled from a mass of water. In contrast, hydrophiles are attracted to water. Hydrophobic molecules tend to be nonpolar and, thu ...
. The genus has diverse morphological features, including and
soredia Soredia are common reproduction, reproductive structures of lichens. Lichens asexual reproduction, reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungus, fung ...
in some species. ''Cryptophaea'' lichens are
corticolous This glossary of mycology is a list of definitions of terms and concepts relevant to mycology, the study of fungi. Terms in common with other fields, if repeated here, generally focus on their mycology-specific meaning. Related terms can be found ...
, growing on tree bark in various
tropical forest Tropical forests are forested ecoregions with tropical climates – that is, land areas approximately bounded by the Tropic of Cancer, tropics of Cancer and Tropic of Capricorn, Capricorn, but possibly affected by other factors such as prevailing ...
ecosystems, from near sea level to elevations over 1000 metres. Recent
molecular phylogenetic Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
studies have revealed complex relationships between ''Cryptophaea'' and other genera within Arthoniaceae, suggesting potential taxonomic revisions may be necessary as more data becomes available.


Taxonomy

The fungal genus ''Cryptophaea'' was
circumscribed In geometry, a circumscribed circle for a set of points is a circle passing through each of them. Such a circle is said to ''circumscribe'' the points or a polygon formed from them; such a polygon is said to be ''inscribed'' in the circle. * Circum ...
by Dries Van den Broeck and Damien Ertz in 2016. The
type specimen In biology, a type is a particular wikt:en:specimen, specimen (or in some cases a group of specimens) of an organism to which the scientific name of that organism is formally associated. In other words, a type is an example that serves to ancho ...
of ''Cryptophaea phaeospora'' was collected in the
Democratic Republic of the Congo The Democratic Republic of the Congo (DRC), also known as the DR Congo, Congo-Kinshasa, or simply the Congo (the last ambiguously also referring to the neighbouring Republic of the Congo), is a country in Central Africa. By land area, it is t ...
, specifically in
Yangambi Yangambi is a town in Isangi territory of Tshopo province, Democratic Republic of the Congo. Location Yangambi is on the north side of the Congo River and lies on the R408 road which connects it to Kisangani 100 kilometers to the east. This road ...
,
Tshopo District Tshopo is one of the 21 provinces of the Democratic Republic of the Congo created in the 2015 repartitioning. It is situated in the north central part of the country on the Tshopo River, for which it is named. Tshopo, Bas-Uele, Haut-Uele, a ...
(
Orientale Province Orientale Province () is one of the former provinces of the Democratic Republic of the Congo and its predecessors the Congo Free State and the Belgian Congo. It went through a series of boundary changes between 1898 and 2015, when it was divided ...
). It was found on a free-standing, unidentified tree species in a garden along the road near the
herbarium A herbarium (plural: herbaria) is a collection of preserved plant biological specimen, specimens and associated data used for scientific study. The specimens may be whole plants or plant parts; these will usually be in dried form mounted on a sh ...
of Yangambi. The specimen was collected at an elevation of , on 13 November 2013, by Van den Broeck. The genus name combines ''crypto'', alluding to the fruiting bodies, with ''phaea'', which refers to the brown fructifications. The
species epithet Specific name may refer to: * in Database management systems, a system-assigned name that is unique within a particular database In Taxonomy (biology), taxonomy, either of these two meanings, each with its own set of rules: * Specific name (botany) ...
''phaeospora'' makes reference to the brown-coloured . In 2024, the genus was significantly expanded with the description of three new species based on specimens collected in various locations across Brazil. This study also provided new insights into the
phylogenetic In biology, phylogenetics () is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as phylogenetic inference. It infers the relationship among organisms based on empirical dat ...
relationships within the genus and its position within the
Arthoniaceae The Arthoniaceae are a family (biology), family of lichenized, Lichenicolous fungus, lichenicolous and saprobic fungi in the order Arthoniales. The Arthoniaceae is the largest family of Arthoniales, with around 800 species. Most species in Arthon ...
. The research revealed that the genus ''Cryptophaea'' is more diverse than initially thought, encompassing species with varying morphological features such as and
soredia Soredia are common reproduction, reproductive structures of lichens. Lichens asexual reproduction, reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungus, fung ...
, which were not present in the
type species In International_Code_of_Zoological_Nomenclature, zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the spe ...
.
Molecular phylogenetic Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
analysis showed that ''Cryptophaea'' species form a distinct
clade In biology, a clade (), also known as a Monophyly, monophyletic group or natural group, is a group of organisms that is composed of a common ancestor and all of its descendants. Clades are the fundamental unit of cladistics, a modern approach t ...
within the Arthoniaceae, but with complex relationships to other genera. Some species previously thought to belong to other genera, such as ''
Cryptothecia ''Cryptothecia'' is a genus of white to greenish crustose lichens that grow on bark, wood, or leaves, in tropical or subtropical areas worldwide. It has a conspicuous prothallus that develops around its periphery which can be bright red in some s ...
'' or '' Herpothallon'', were found to be more closely related to ''Cryptophaea''. The study suggested that the expanded ''Cryptophaea'' might be
polyphyletic A polyphyletic group is an assemblage that includes organisms with mixed evolutionary origin but does not include their most recent common ancestor. The term is often applied to groups that share similar features known as Homoplasy, homoplasies ...
, with some newly described species potentially forming separate lineages. This indicates that further
taxonomic 280px, Generalized scheme of taxonomy Taxonomy is a practice and science concerned with classification or categorization. Typically, there are two parts to it: the development of an underlying scheme of classes (a taxonomy) and the allocation ...
revisions may be necessary as more data becomes available. From a
biogeographic Biogeography is the study of the distribution of species and ecosystems in geographic space and through geological time. Organisms and biological communities often vary in a regular fashion along geographic gradients of latitude, elevation, ...
perspective, the discovery of multiple ''Cryptophaea'' species in Brazil, far from the original Congo Basin location of ''C. phaeospora'', suggests a potentially wider distribution of the genus in
tropical The tropics are the regions of Earth surrounding the equator, where the sun may shine directly overhead. This contrasts with the temperate or polar regions of Earth, where the Sun can never be directly overhead. This is because of Earth's ax ...
regions globally.


Description

The crustose
thallus Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
of ''Cryptophaea'' is firmly attached to its and has a whitish grey-green colour. It is slightly (resembling fine filaments), continuous, and lacks any or structures. The thallus is relatively thin, measuring about 20–40 
μm The micrometre (Commonwealth English as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer (American English), also commonly known by the non-SI term micron, is a unit of length in the International System ...
in thickness, and is
hydrophobic In chemistry, hydrophobicity is the chemical property of a molecule (called a hydrophobe) that is seemingly repelled from a mass of water. In contrast, hydrophiles are attracted to water. Hydrophobic molecules tend to be nonpolar and, thu ...
(repels water). When in contact with other lichens, a reddish border can be observed; otherwise, the (the initial growth stage of the lichen) is distinct, white, and byssoid, composed mainly of interwoven and radiating
hypha A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium. Structure A hypha consists of one o ...
e (filamentous fungal structures). The (
photosynthetic Photosynthesis ( ) is a Biological system, system of biological processes by which Photoautotrophism, photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical ener ...
partner) in ''Cryptophaea'' is , meaning it belongs to the genus Trentepohlia, which is a type of
green algae The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ...
. These photobionts are characterised by unbranched or branched chains of angular-rounded cells, measuring 7–30 by 4–7.5 μm. They are abundant within the areas (regions containing the reproductive structures) and are often visible as white to brownish hair-like structures on the
ascomata An ascocarp, or ascoma (: ascomata), is the fruiting body (sporocarp (fungi), sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded ascus, asci, each of which typically contains four to ...
(fruiting bodies). The ascomata are distinctly visible and appear as regularly rounded to irregularly elongate structures, brownish, (covered with fine hairs), emergent (raised above the thallus surface), convex, and hydrophobic. They range in size from 0.2 to 1.2 by 0.15–0.5 mm. Young ascomata are typically covered or surrounded by a bright orange (a powdery or crystalline coating). The internal structure of the ascomata includes a
hymenium The hymenium is the tissue layer on the hymenophore of a fungal fruiting body where the cells develop into basidia or asci, which produce spores. In some species all of the cells of the hymenium develop into basidia or asci, while in oth ...
(the spore-bearing layer) that is 60–90 μm tall and does not stain with
iodine Iodine is a chemical element; it has symbol I and atomic number 53. The heaviest of the stable halogens, it exists at standard conditions as a semi-lustrous, non-metallic solid that melts to form a deep violet liquid at , and boils to a vi ...
(I–, KI–). Interascal filaments (thread-like structures among the asci) are few,
hyaline A hyaline substance is one with a glassy appearance. The word is derived from , and . Histopathology Hyaline cartilage is named after its glassy appearance on fresh gross pathology. On light microscopy of H&E stained slides, the extracellula ...
(translucent), branched, wavy, and 1.1–2.7 μm wide. They do not widen or change colour at the tips. The asci (spore-producing cells) are obovoid to
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
, measuring 20–30 by 10–18 μm, and also do not stain with iodine. They follow the ''
Arthothelium ''Arthothelium'' is a genus of lichen-forming fungi in the family Arthoniaceae. Description ''Arthothelium'' is a genus of crustose lichens, which can either be (embedded within the ) or superficial (growing on the surface). The thallus may s ...
''-type pattern. Each
ascus An ascus (; : asci) is the sexual spore-bearing cell produced in ascomycete fungi. Each ascus usually contains eight ascospores (or octad), produced by meiosis followed, in most species, by a mitotic cell division. However, asci in some gen ...
contains eight ascospores, which are hyaline initially but soon turn greyish to brownish. The ascospores are ellipsoid, 9–13 by 6–8 μm, and mostly (divided into compartments), with 6–9 (compartments). The terminal cells are often larger and undivided, with a hyaline (outer spore layer). Recent studies have expanded our understanding of the morphological diversity within the genus ''Cryptophaea''. Some species now known to belong to this genus may exhibit the following characteristics: * The thallus can be corticate or non-corticate, and may or may not be surrounded by a prothallus. * Some species produce pseudoisidia, which can vary in shape from roughly spherical () to elongated. These pseudoisidia may be constricted at the base in certain species. * Other species develop soredia, either in distinct soralia or dispersed across the thallus. * While the type species ''C. phaeospora'' produces ascomata, some recently described species are known only in their sterile states. The thallus and apothecial sections generally do not react with common chemical spot tests (K–, C–, KC–, PD–, UV–). However, young ascomata surrounded or covered by an orange pruina react with K (
potassium hydroxide Potassium hydroxide is an inorganic compound with the formula K OH, and is commonly called caustic potash. Along with sodium hydroxide (NaOH), KOH is a prototypical strong base. It has many industrial and niche applications, most of which utili ...
) to produce a purplish colour. No
calcium oxalate Calcium oxalate (in archaic terminology, oxalate of lime) is a calcium salt of oxalic acid with the chemical formula or . It forms hydrates , where ''n'' varies from 1 to 3. Anhydrous and all hydrated forms are colorless or white. The monohydr ...
crystals are observed after treatment with
sulphuric acid Sulfuric acid (American spelling and the preferred IUPAC name) or sulphuric acid ( Commonwealth spelling), known in antiquity as oil of vitriol, is a mineral acid composed of the elements sulfur, oxygen, and hydrogen, with the molecular formu ...
.
Thin-layer chromatography Thin-layer chromatography (TLC) is a chromatography technique that separates components in non-volatile mixtures. It is performed on a TLC plate made up of a non-reactive solid coated with a thin layer of adsorbent material. This is called the sta ...
identifies three substances:
parietin Parietin is the predominant cortical pigment of lichens in the genus '' Caloplaca'', a secondary product of the lichen '' Xanthoria parietina'', and a pigment found in the roots of curled dock (''Rumex crispus''). It has an orange-yellow color ...
(an
anthraquinone Anthraquinone, also called anthracenedione or dioxoanthracene, is an aromatic hydrocarbon, aromatic organic compound with formula . Several isomers exist but these terms usually refer to 9,10-anthraquinone (IUPAC: 9,10-dioxoanthracene) wherein th ...
) that shows a bright yellow-orange spot under
ultraviolet Ultraviolet radiation, also known as simply UV, is electromagnetic radiation of wavelengths of 10–400 nanometers, shorter than that of visible light, but longer than X-rays. UV radiation is present in sunlight and constitutes about 10% of ...
light before heating, and two unknown substances showing a pinkish-red spot and a second substance visible under short wavelength UV light before heating. Some species contain
lichexanthone Lichexanthone is an organic compound in the structural class of chemicals known as xanthones. Lichexanthone was first isolated and identified by Japanese chemists from a species of foliose lichen, leafy lichen in the 1940s. The compound is known ...
, which causes the thallus to
fluoresce Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with color ...
yellow under UV light, while others may contain confluentic acid or divaricatic acid.


Habitat and distribution

At the time of its original publication, ''Cryptophaea phaeospora'' was known to occur only from the village of Yangambi, located in the
Congo Basin The Congo Basin () is the sedimentary basin of the Congo River. The Congo Basin is located in Central Africa, in a region known as west equatorial Africa. The Congo Basin region is sometimes known simply as the Congo. It contains some of the larg ...
. It was found in two nearby localities within this region. The species grows on the bark of free-standing, exposed trees in gardens close to the road. It has not been observed in the dense tropical forests along the Congo River, suggesting that it is likely absent in more shaded environments. Subsequent studies have expanded the known distribution of the genus ''Cryptophaea'', with some new species discovered in various locations across Brazil. The known distribution of ''Cryptophaea'' species includes: * '' C. phaeospora'':
Democratic Republic of the Congo The Democratic Republic of the Congo (DRC), also known as the DR Congo, Congo-Kinshasa, or simply the Congo (the last ambiguously also referring to the neighbouring Republic of the Congo), is a country in Central Africa. By land area, it is t ...
, specifically in
Yangambi Yangambi is a town in Isangi territory of Tshopo province, Democratic Republic of the Congo. Location Yangambi is on the north side of the Congo River and lies on the R408 road which connects it to Kisangani 100 kilometers to the east. This road ...
,
Tshopo District Tshopo is one of the 21 provinces of the Democratic Republic of the Congo created in the 2015 repartitioning. It is situated in the north central part of the country on the Tshopo River, for which it is named. Tshopo, Bas-Uele, Haut-Uele, a ...
(
Orientale Province Orientale Province () is one of the former provinces of the Democratic Republic of the Congo and its predecessors the Congo Free State and the Belgian Congo. It went through a series of boundary changes between 1898 and 2015, when it was divided ...
). * '' C. constrictopseudisidiata'':
Bahia Bahia () is one of the 26 Federative units of Brazil, states of Brazil, located in the Northeast Region, Brazil, Northeast Region of the country. It is the fourth-largest Brazilian state by population (after São Paulo (state), São Paulo, Mina ...
state, Brazil, in the
Chapada Diamantina Chapada Diamantina (; Portuguese language, Portuguese for the "Diamond Plateau") is a region of Bahia state, in the Northeast Region, Brazil, Northeast of Brazil. This mountain range is known as “Serra do Espinhaço,” in Minas Gerais state, ...
region near
Lençóis Lençóis is a municipality in the state of Bahia in Brazil. The population is 11,499 (2020 est.) in an area of 1277 km2. The town has a well-preserved colonial atmosphere and is the starting point for treks into Chapada Diamantina. Transp ...
. * '' C. lichexanthopseudisidiata'': Bahia state, Brazil, also in the Chapada Diamantina region near Lençóis. * '' C. lichexanthosorediata'': Bahia state, Brazil, in the same area as the previous two species. The habitat preferences of ''Cryptophaea'' species appear to be diverse within
tropical forest Tropical forests are forested ecoregions with tropical climates – that is, land areas approximately bounded by the Tropic of Cancer, tropics of Cancer and Tropic of Capricorn, Capricorn, but possibly affected by other factors such as prevailing ...
ecosystems. They have been found in: * Gardens with free-standing, exposed trees (''C. phaeospora''). * Primary Atlantic rainforest (''C. constrictopseudisidiata'', ''C. lichexanthopseudisidiata'', ''C. lichexanthosorediata''). *
Transitional forest Forest transition refers to a geographic theory describing a reversal or turnaround in land-use trends for a given territory from a period of net forest area loss (i.e., deforestation) to a period of net forest area gain. The term "landscape tur ...
s between Atlantic rainforest and
Caatinga Caatinga () is a type of semi-arid tropical vegetation, and an ecoregion characterized by this vegetation in interior northeastern Brazil. The name "Caatinga" comes from the Tupi word '' ka'atinga'', meaning "white forest" or "white vegetat ...
. All known species grow on tree bark (
corticolous This glossary of mycology is a list of definitions of terms and concepts relevant to mycology, the study of fungi. Terms in common with other fields, if repeated here, generally focus on their mycology-specific meaning. Related terms can be found ...
), but they have been found at varying elevations, from near sea level to altitudes of over 1000 meters. The discovery of multiple species in Brazil suggests that the genus may be more widespread in tropical regions than initially thought, and future studies may reveal additional species and expand the known distribution further.


References

{{Taxonbar, from=Q55690721 Arthoniaceae Arthoniomycetes genera Taxa described in 2016 Taxa named by Damien Ertz Lichen genera