Calicium Schaereri
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''Calicium'' is a
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of
leprose lichen Lichens are symbiotic organisms made up of multiple species: a fungus, one or more photobionts (an alga and/or a cyanobacteria) and sometimes a yeast. They are regularly grouped by their external appearance – a characteristic known as their gro ...
s. It is in the family
Caliciaceae The Caliciaceae are a family (taxonomy), family of mostly lichen-forming fungus, fungi belonging to the class (taxonomy), class Lecanoromycetes in the division (mycology), division Ascomycota. Although the family has had its classification chan ...
, and has 40 species. The sexual reproduction structures are a mass of loose
ascospores In fungi, an ascospore is the sexual spore formed inside an ascus—the sac-like cell that defines the division Ascomycota, the largest and most diverse division of fungi. After two parental nuclei fuse, the ascus undergoes meiosis (halving of ...
that are enclosed by a cup shaped
exciple A lichen ( , ) is a hybrid colony of algae or cyanobacteria living symbiotically among filaments of multiple fungus species, along with yeasts and bacteria embedded in the cortex or "skin", in a mutualistic relationship.
sitting on top of a tiny stalk, having the appearance of a dressmaker's pin (called a mazaedium), hence the common name pin lichen.Field Guide to California Lichens, Stephen Sharnoff, Yale University Press, 2014, They are also commonly called stubble lichens. They have been used as
indicator species A bioindicator is any species (an indicator species) or group of species whose function, population, or status can reveal the qualitative status of the environment. The most common indicator species are animals. For example, copepods and other sma ...
for old growth redwood forests.


Taxonomy

The genus was
circumscribed In geometry, a circumscribed circle for a set of points is a circle passing through each of them. Such a circle is said to ''circumscribe'' the points or a polygon formed from them; such a polygon is said to be ''inscribed'' in the circle. * Circum ...
in 1794 by the mycologist
Christiaan Hendrik Persoon Christiaan Hendrik Persoon (31 December 1761 – 16 November 1836) was a Cape Colony mycologist who is recognized as one of the founders of mycology, mycological Taxonomy (biology), taxonomy. Early life Persoon was born in Cape Colony at ...
. He included three species in his initial circumscription of the genus: ''C. viride'', ''C. salicinum'', and ''C. pallidum''. The genus name, derived from the
Latin Latin ( or ) is a classical language belonging to the Italic languages, Italic branch of the Indo-European languages. Latin was originally spoken by the Latins (Italic tribe), Latins in Latium (now known as Lazio), the lower Tiber area aroun ...
''calix'' or ''calicis'' ("cup") with the
diminutive A diminutive is a word obtained by modifying a root word to convey a slighter degree of its root meaning, either to convey the smallness of the object or quality named, or to convey a sense of intimacy or endearment, and sometimes to belittle s ...
suffix ''-ium'', refers to the shape of the ascocarps.


Description

The genus ''Calicium'' features crustose lichens, which can be to in texture, or immersed in the substrate, and display a range of colours from grey to green-grey, pale yellow, or dark green. Its , a symbiotic
green alga The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ( ...
, is of the type. The
ascomata An ascocarp, or ascoma (: ascomata), is the fruiting body (sporocarp (fungi), sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded ascus, asci, each of which typically contains four to ...
(fruiting bodies) are
apothecia An ascocarp, or ascoma (: ascomata), is the fruiting body ( sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded asci, each of which typically contains four to eight ascospores. As ...
l in nature, usually elevated on a long, distinct stalk with a spherical to lens-shaped head, though some may be directly attached (). These stalks consist of thickened
hypha A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium. Structure A hypha consists of one o ...
e that are brown to greenish-black and irregularly interwoven. The cup-shaped , a supportive structure around the ascomata, is well developed and envelops the dry spore mass. The asci (spore-bearing cells) are cylindrical to (club-shaped) and develop individually from hyphae with
croziers A crozier or crosier (also known as a paterissa, pastoral staff, or bishop's staff) is a stylized staff that is a symbol of the governing office of a bishop or abbot and is carried by high-ranking prelates of Roman Catholic, Eastern Catholi ...
, typically dissolving early in their lifespan. within the genus contain a single
septum In biology, a septum (Latin language, Latin for ''something that encloses''; septa) is a wall, dividing a Body cavity, cavity or structure into smaller ones. A cavity or structure divided in this way may be referred to as septate. Examples Hum ...
and form a distinctive black, dry-spore mass known as a . These spores have a thick, dark brown wall, often adorned with unique ornamentation. They are generally in the size range 7–19 by 4–8 
μm The micrometre (Commonwealth English as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer (American English), also commonly known by the non-SI term micron, is a unit of length in the International System ...
. In terms of asexual reproduction, ''Calicium'' possesses
pycnidia A pycnidium (plural pycnidia) is an asexual fruiting body produced by mitosporic fungi, for instance in the order Sphaeropsidales ( Deuteromycota, Coelomycetes) or order Pleosporales (Ascomycota, Dothideomycetes). It is often spherical or inve ...
, which are sessile or slightly immersed structures producing
conidia A conidium ( ; : conidia), sometimes termed an asexual chlamydospore or chlamydoconidium (: chlamydoconidia), is an asexual, non- motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also ...
(asexual spores). These pycnidia are simple and spherical with a (point-like)
ostiole An ''ostiole'' is a small hole or opening through which algae or fungi release their mature spores. The word is a diminutive of wikt:ostium, "ostium", "opening". The term is also used in higher plants, for example to denote the opening of the ...
. The conidiophores within are branched, with somewhat cylindrical, enteroblastic conidigenous cells. The conidia themselves are broadly
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
to short-cylindrical, colourless, and lack septa. Chemically, the genus contains an array of compounds including
orcinol Orcinol is an organic compound with the formula CH3C6H3(OH)2. It occurs in many species of lichens including ''Roccella tinctoria'' and ''Lecanora''. Orcinol has been detected in the "toxic glue" of the ant species ''Camponotus saundersi''. It is ...
and ß-orcinol
depside A depside is a type of polyphenolic compound composed of two or more monocyclic aromatic units linked by an ester group. Depsides are most often found in lichens, but have also been isolated from higher plants, including species of the Ericaceae, ...
s, along with
depsidone Depsidones (+ " depside" + "one") are chemical compounds that are sometimes found as secondary metabolites in lichens. They are esters that are both depsides and cyclic ethers. An example is norstictic acid Norstictic acid is a depsidone produ ...
s,
dibenzofuran Dibenzofuran (DBF) is a heterocyclic organic compound with the chemical structure shown at right. It is an aromatic compound that has two benzene rings fused to a central furan ring. All the numbered carbon atoms have a hydrogen atom bonded to each ...
s,
anthraquinone Anthraquinone, also called anthracenedione or dioxoanthracene, is an aromatic hydrocarbon, aromatic organic compound with formula . Several isomers exist but these terms usually refer to 9,10-anthraquinone (IUPAC: 9,10-dioxoanthracene) wherein th ...
s,
xanthone Xanthone is an organic compound with the molecular formula C13H8O2. It is a white solid. In 1939, xanthone was introduced as an insecticide and it currently finds uses as ovicide for codling moth eggs and as a larvicide. Xanthone is also use ...
s, and chemical derivatives of
pulvinic acid Pulvinic acids are natural chemical pigments found in some lichens, derived biosynthetically from the aromatic amino acids phenylalanine and tyrosine, via dimerization and oxidative ring-cleavage of arylpyruvic acids, a process that also produces ...
. These chemicals vary across different species within the genus.


Habitat, distribution, and ecology

''Calicium'' has a global presence, primarily found in cool to
temperate In geography, the temperate climates of Earth occur in the middle latitudes (approximately 23.5° to 66.5° N/S of the Equator), which span between the tropics and the polar regions of Earth. These zones generally have wider temperature ran ...
regions, with only a few species known to occur in
tropical The tropics are the regions of Earth surrounding the equator, where the sun may shine directly overhead. This contrasts with the temperate or polar regions of Earth, where the Sun can never be directly overhead. This is because of Earth's ax ...
areas. These species typically grow on bark and
wood Wood is a structural tissue/material found as xylem in the stems and roots of trees and other woody plants. It is an organic materiala natural composite of cellulosic fibers that are strong in tension and embedded in a matrix of lignin t ...
, with rare occurrences on rocks and one species specifically adapted to
siliceous rock Siliceous rocks are sedimentary rocks that have silica (SiO2) as the principal constituent. The most common siliceous rock is chert; other types include diatomite. They commonly form from silica-secreting organisms such as radiolarians, diatoms, o ...
s. ''Calicium'' prefers environments with low light, high humidity, and shelter, often thriving in
old-growth forest An old-growth forest or primary forest is a forest that has developed over a long period of time without disturbance. Due to this, old-growth forests exhibit unique ecological features. The Food and Agriculture Organization of the United Natio ...
s, although some species can adapt to more open, sun-exposed locations. Two species of ''Calicium'' are lichenicolous, meaning they grow on other lichens. These are '' Calicium episcalare'', which is parasitic on '' Hypocenomyce scalaris'', and '' Calicium ramboldiicola'', which grows on '' Ramboldia elabens''.


Evolutionary history

The discovery of a ''Calicium''-like fossil in
Baltic amber Baltic amber or succinite is amber from the Baltic region, home of its largest known deposits. It was produced sometime during the Eocene epoch, but exactly when is controversial. It has been estimated that this forested region provided the re ...
dating back 55–35 million years ago
myr Million years ago, abbreviated as Mya, Myr (megayear) or Ma (megaannum), is a unit of time equal to (i.e. years), or approximately 31.6 teraseconds. Usage Myr is in common use in fields such as Earth science and cosmology. Myr is also used w ...
indicates that the main distinguishing characteristics of this genus have persisted for at least tens of millions of years. A fossil-calibrated
phylogeny A phylogenetic tree or phylogeny is a graphical representation which shows the evolutionary history between a set of species or Taxon, taxa during a specific time.Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, M ...
that includes this fossil suggests that the family Caliciaceae diversified from its
most recent common ancestor A most recent common ancestor (MRCA), also known as a last common ancestor (LCA), is the most recent individual from which all organisms of a set are inferred to have descended. The most recent common ancestor of a higher taxon is generally assu ...
103–156 myr ago in the early
Cretaceous The Cretaceous ( ) is a geological period that lasted from about 143.1 to 66 mya (unit), million years ago (Mya). It is the third and final period of the Mesozoic Era (geology), Era, as well as the longest. At around 77.1 million years, it is the ...
. This fossil lichen has since been formally named as '' Calicium succini''.


Species

,
Species Fungorum ''Index Fungorum'' is an international project to index all formal names (Binomial nomenclature, scientific names) in the fungus Kingdom (biology), kingdom. As of 2015, the project is based at the Royal Botanic Gardens, Kew, one of three partn ...
(in the
Catalogue of Life The Catalogue of Life (CoL) is an online database that provides an index of known species of animals, plants, fungi, and microorganisms. It was created in 2001 as a partnership between the global Species 2000 and the American Integrated Taxono ...
) accepts 40 species in ''Calicium'': * '' Calicium abietinum'' * '' Calicium adspersum'' * '' Calicium atronitescens'' * '' Calicium brachysporum''
California California () is a U.S. state, state in the Western United States that lies on the West Coast of the United States, Pacific Coast. It borders Oregon to the north, Nevada and Arizona to the east, and shares Mexico–United States border, an ...
* '' Calicium carolinianum'' * '' Calicium chlorosporum'' * '' Calicium contortum'' * '' Calicium corynellum'' * '' Calicium diploellum'' * '' Calicium episcalare'' – Sweden * '' Calicium glebosum'' * '' Calicium hyperelloides'' * '' Calicium indicum'' * '' Calicium laevigatum'' * '' Calicium lecideinum'' * '' Calicium lenticulare'' * '' Calicium lucidum'' * '' Calicium lutescens'' – Africa * '' Calicium martinii'' * '' Calicium muriformis'' * '' Calicium nobile'' * '' Calicium notarisii'' * '' Calicium parvum'' * '' Calicium pinicola'' * '' Calicium pleuriseptatum'' * '' Calicium poculatum'' * '' Calicium pyriforme'' * '' Calicium quercinum'' * '' Calicium ramboldiicola'' * '' Calicium robustellum'' * '' Calicium salicinum'' * '' Calicium sequoiae''
California California () is a U.S. state, state in the Western United States that lies on the West Coast of the United States, Pacific Coast. It borders Oregon to the north, Nevada and Arizona to the east, and shares Mexico–United States border, an ...
* '' Calicium sperlingiae''
Oregon Oregon ( , ) is a U.S. state, state in the Pacific Northwest region of the United States. It is a part of the Western U.S., with the Columbia River delineating much of Oregon's northern boundary with Washington (state), Washington, while t ...
, USA * '' Calicium succini'' * '' Calicium tenuisporum'' * '' Calicium tigillare'' * '' Calicium trabinellum'' * '' Calicium trachylioides'' * '' Calicium tricolor'' * '' Calicium verrucosum'' * '' Calicium victorianum'' * '' Calicium viride'' The species ''Calicium adaequatum'', first described by
William Nylander William Andrew Michael Junior Nylander Altelius (born 1 May 1996) is a Swedish professional ice hockey Forward (ice hockey), forward for the Toronto Maple Leafs of the National Hockey League (NHL). Nylander was selected by the Maple Leafs in t ...
in 1869, was moved to the
monotypic In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unisp ...
genus '' allocalicium'' in 2016 based on
molecular phylogenetics Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
analysis.


References

{{Taxonbar, from=Q5019850 * Lichen genera Taxa named by Christiaan Hendrik Persoon Caliciales genera Taxa described in 1794