Benzamidine is an
organic compound
Some chemical authorities define an organic compound as a chemical compound that contains a carbon–hydrogen or carbon–carbon bond; others consider an organic compound to be any chemical compound that contains carbon. For example, carbon-co ...
with the formula C
6H
5C(NH)NH
2. It is the simplest
aryl amidine
Amidines are organic compounds with the functional group RC(NR)NR2, where the R groups can be the same or different. They are the imine derivatives of amides (RC(O)NR2). The simplest amidine is formamidine, HC(=NH)NH2.
Examples of amidines includ ...
. The compound is a white solid that is slightly soluble in water. It is usually handled as the hydrochloride salt, a white, water-soluble solid.
Structure
Benzamidine has one short C=NH bond and one longer C-NH
2 bond, which are respectively 129 and 135 pm in length, respectively.
The triangular diamine group gives it a distinctive shape which shows up in
difference density maps.
Applications
Benzamidine is a reversible
competitive inhibitor of
trypsin
Trypsin is an enzyme in the first section of the small intestine that starts the digestion of protein molecules by cutting long chains of amino acids into smaller pieces. It is a serine protease from the PA clan superfamily, found in the dig ...
, trypsin-like enzymes, and
serine proteases.
It is often used as a
ligand
In coordination chemistry, a ligand is an ion or molecule with a functional group that binds to a central metal atom to form a coordination complex. The bonding with the metal generally involves formal donation of one or more of the ligand's el ...
in
protein crystallography to prevent
proteases from degrading a protein of interest. The benzamidine moiety is also found in some pharmaceuticals, such as
dabigatran
Dabigatran, sold under the brand name Pradaxa among others, is an anticoagulant used to treat and prevent blood clots and to prevent stroke in people with atrial fibrillation. It is commonly used to prevent blood clots following hip or kn ...
.
Condensation with various
haloketones provides a synthetic route to 2,4-disubstituted
imidazoles.
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References
{{reflist
Phenyl compounds
Amidines