Andreas Dräger
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Andreas Dräger (; born 20 September 1980) is a German bioinformatician who leads the research group for
Data Analytics Analytics is the systematic computational analysis of data or statistics. It is used for the discovery, interpretation, and communication of meaningful patterns in data, which also falls under and directly relates to the umbrella term, data sci ...
and
Bioinformatics Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, ...
at the
Martin Luther University of Halle-Wittenberg Martin Luther University Halle-Wittenberg (), also referred to as MLU, is a public university, public research university in the cities of Halle, Saxony-Anhalt, Halle and Wittenberg. It is the largest and oldest university in the German State o ...
.


Education

In high school, Dräger was fascinated by
computer science Computer science is the study of computation, information, and automation. Computer science spans Theoretical computer science, theoretical disciplines (such as algorithms, theory of computation, and information theory) to Applied science, ...
and recent advancements in
genetics Genetics is the study of genes, genetic variation, and heredity in organisms.Hartl D, Jones E (2005) It is an important branch in biology because heredity is vital to organisms' evolution. Gregor Mendel, a Moravian Augustinians, Augustinian ...
and
biotechnology Biotechnology is a multidisciplinary field that involves the integration of natural sciences and Engineering Science, engineering sciences in order to achieve the application of organisms and parts thereof for products and services. Specialists ...
in the late 1990s. When he learned about a new degree program that allowed combining those technologies, he was immediately inspired. So, Dräger studied
bioinformatics Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, ...
at the
Martin Luther University of Halle-Wittenberg Martin Luther University Halle-Wittenberg (), also referred to as MLU, is a public university, public research university in the cities of Halle, Saxony-Anhalt, Halle and Wittenberg. It is the largest and oldest university in the German State o ...
in
Halle (Saale) Halle (Saale), or simply Halle (), is the second largest city of the States of Germany, German state of Saxony-Anhalt. It is the sixth-most populous city in the area of former East Germany after (East Berlin, East) Berlin, Leipzig, Dresden, Chem ...
from 2000 to 2006. He worked as an intern for
genome sequencing Whole genome sequencing (WGS), also known as full genome sequencing or just genome sequencing, is the process of determining the entirety of the DNA sequence of an organism's genome at a single time. This entails sequencing all of an organism's ...
at the
Max Planck Institute for Molecular Genetics The Max Planck Institute for Molecular Genetics is a research institute for molecular genetics based in Berlin, Germany. It is part of the Max Planck Institute network of the Max Planck Society for the Advancement of Science. Departments and re ...
,
Berlin Berlin ( ; ) is the Capital of Germany, capital and largest city of Germany, by both area and List of cities in Germany by population, population. With 3.7 million inhabitants, it has the List of cities in the European Union by population withi ...
. He prepared his thesis about heavy-metal-resistant bacteria at the
microbiology Microbiology () is the branches of science, scientific study of microorganisms, those being of unicellular organism, unicellular (single-celled), multicellular organism, multicellular (consisting of complex cells), or non-cellular life, acellula ...
department of the
University of Illinois The University of Illinois Urbana-Champaign (UIUC, U of I, Illinois, or University of Illinois) is a public university, public land-grant university, land-grant research university in the Champaign–Urbana metropolitan area, Illinois, United ...
at
Chicago Chicago is the List of municipalities in Illinois, most populous city in the U.S. state of Illinois and in the Midwestern United States. With a population of 2,746,388, as of the 2020 United States census, 2020 census, it is the List of Unite ...
. Dräger earned his
doctorate A doctorate (from Latin ''doctor'', meaning "teacher") or doctoral degree is a postgraduate academic degree awarded by universities and some other educational institutions, derived from the ancient formalism '' licentia docendi'' ("licence to teach ...
at the Center for Bioinformatics in
Tübingen Tübingen (; ) is a traditional college town, university city in central Baden-Württemberg, Germany. It is situated south of the state capital, Stuttgart, and developed on both sides of the Neckar and Ammer (Neckar), Ammer rivers. about one in ...
(ZBIT), focusing on the
dynamic simulation Dynamical system simulation or dynamic system simulation is the use of a computer program to model the time-varying behavior of a dynamical system. The systems are typically described by ordinary differential equations or partial differential equ ...
of
metabolic networks A metabolic network is the complete set of metabolic and physical processes that determine the physiological and biochemical properties of a cell. As such, these networks comprise the chemical reactions of metabolism, the metabolic pathways, as w ...
in a virtual liver. During this time, he worked as a visiting research student for
software engineering Software engineering is a branch of both computer science and engineering focused on designing, developing, testing, and maintaining Application software, software applications. It involves applying engineering design process, engineering principl ...
at
Keio University , abbreviated as or , is a private university, private research university located in Minato, Tokyo, Japan. It was originally established as a school for Rangaku, Western studies in 1858 in Edo. It was granted university status in 1920, becomi ...
in
Yokohama is the List of cities in Japan, second-largest city in Japan by population as well as by area, and the country's most populous Municipalities of Japan, municipality. It is the capital and most populous city in Kanagawa Prefecture, with a popu ...
in 2010. After returning from Japan, the Faculty of Science of the
University of Tübingen The University of Tübingen, officially the Eberhard Karl University of Tübingen (; ), is a public research university located in the city of Tübingen, Baden-Württemberg, Germany. The University of Tübingen is one of eleven German Excellenc ...
honored his thesis with the 2011 dissertation award.


Career

In early 2011, Dräger received funding for an independent research project as a postdoctoral junior group leader. In 2013, he undertook another two-year postdoc program as a Marie-Curie research scholar in
La Jolla La Jolla ( , ) is a hilly, seaside neighborhood in San Diego, California, occupying of curving coastline along the Pacific Ocean. The population reported in the 2010 census was 46,781. The climate is mild, with an average daily temperature o ...
. He worked in the Systems Biology Research Group at the
UCSD The University of California, San Diego (UC San Diego in communications material, formerly and colloquially UCSD) is a public land-grant research university in San Diego, California, United States. Established in 1960 near the pre-existing ...
(the University of California,
San Diego San Diego ( , ) is a city on the Pacific coast of Southern California, adjacent to the Mexico–United States border. With a population of over 1.4 million, it is the List of United States cities by population, eighth-most populous city in t ...
). Upon returning to Tübingen in 2015, he founded an independent research group at the university. In 2018 he was appointed as
junior professor The junior professorship is an academic rank at universities and research institutions in Germany. In 2002, this position was introduced with the fifth novella of the Framework Act for Higher Education to enable young scientists and academics wi ...
for Computational Systems Biology of Infections and Antimicrobial-Resistant Pathogens within Tübingen's newly established interfaculty Institute for Bioinformatics and Medical Informatics (IBMI). His research group belonged to Tübingen's Cluster of Excellence, "Controlling Microbes to Fight Infections" (CMFI). In February 2024, Dräger was appointed as a university professor and has since held the chair of data analytics and bioinformatics at the
Martin Luther University of Halle-Wittenberg Martin Luther University Halle-Wittenberg (), also referred to as MLU, is a public university, public research university in the cities of Halle, Saxony-Anhalt, Halle and Wittenberg. It is the largest and oldest university in the German State o ...
, while his group remains part of the German National Center for Infection Research (DZIF) at the
University of Tübingen The University of Tübingen, officially the Eberhard Karl University of Tübingen (; ), is a public research university located in the city of Tübingen, Baden-Württemberg, Germany. The University of Tübingen is one of eleven German Excellenc ...
.


Research

Andreas Dräger's research focuses on
mathematical models A mathematical model is an abstract description of a concrete system using mathematical concepts and language. The process of developing a mathematical model is termed ''mathematical modeling''. Mathematical models are used in applied mathemati ...
of the metabolic mechanisms behind antibiotic resistance. The central aspect of his research group is the
human microbiome The human microbiome is the aggregate of all microbiota that reside on or within human tissues and biofluids along with the corresponding List of human anatomical features, anatomical sites in which they reside, including the human gastrointes ...
living within the airways from the
nasal cavities The nasal cavity is a large, air-filled space above and behind the nose in the middle of the face. The nasal septum divides the cavity into two cavities, also known as fossae. Each cavity is the continuation of one of the two nostrils. The nasal c ...
to the
lung The lungs are the primary Organ (biology), organs of the respiratory system in many animals, including humans. In mammals and most other tetrapods, two lungs are located near the Vertebral column, backbone on either side of the heart. Their ...
. Dräger aims to identify new ways to combat life-threatening bacterial and viral infections.
Hospital-acquired infection A hospital-acquired infection, also known as a nosocomial infection (from the Greek , meaning "hospital"), is an infection that is acquired in a hospital or other health care, healthcare facility. To emphasize both hospital and nonhospital sett ...
s of the
respiratory tract The respiratory tract is the subdivision of the respiratory system involved with the process of conducting air to the alveoli for the purposes of gas exchange in mammals. The respiratory tract is lined with respiratory epithelium as respirato ...
have the highest priority of the effort because this often involves germs with multi-resistance against antibiotic treatment. Particularly harmful bacteria in this habitat include ''
Pseudomonas aeruginosa ''Pseudomonas aeruginosa'' is a common Bacterial capsule, encapsulated, Gram-negative bacteria, Gram-negative, Aerobic organism, aerobic–facultative anaerobe, facultatively anaerobic, Bacillus (shape), rod-shaped bacteria, bacterium that can c ...
'' and ''
Staphylococcus aureus ''Staphylococcus aureus'' is a Gram-positive spherically shaped bacterium, a member of the Bacillota, and is a usual member of the microbiota of the body, frequently found in the upper respiratory tract and on the skin. It is often posi ...
''. Another research area involves risk groups, such as
cystic fibrosis Cystic fibrosis (CF) is a genetic disorder inherited in an autosomal recessive manner that impairs the normal clearance of Sputum, mucus from the lungs, which facilitates the colonization and infection of the lungs by bacteria, notably ''Staphy ...
patients. Applying metabolic network modeling for this endeavor requires a comprehensive understanding of the underlying processes of mutual interactions between
pathogen In biology, a pathogen (, "suffering", "passion" and , "producer of"), in the oldest and broadest sense, is any organism or agent that can produce disease. A pathogen may also be referred to as an infectious agent, or simply a Germ theory of d ...
s,
commensal bacteria Commensalism is a long-term biological interaction (symbiosis) in which members of one species gain benefits while those of the other species neither benefit nor are harmed. This is in contrast with mutualism, in which both organisms benefit fr ...
, and their
host A host is a person responsible for guests at an event or for providing hospitality during it. Host may also refer to: Places * Host, Pennsylvania, a village in Berks County * Host Island, in the Wilhelm Archipelago, Antarctica People * ...
. This work also requires developing specialized software to create, analyze, and share computer models in
systems biology Systems biology is the computational modeling, computational and mathematical analysis and modeling of complex biological systems. It is a biology-based interdisciplinary field of study that focuses on complex interactions within biological system ...
in general. For this reason, the group is also actively involved in several
standardization Standardization (American English) or standardisation (British English) is the process of implementing and developing technical standards based on the consensus of different parties that include firms, users, interest groups, standards organiza ...
efforts in systems biology that are part of the initiatives by the Computational Modeling in Biology Network of international researchers. Dräger sees improved
interoperability Interoperability is a characteristic of a product or system to work with other products or systems. While the term was initially defined for information technology or systems engineering services to allow for information exchange, a broader de ...
and reuse of the developed computer models according to the principles of
FAIR data FAIR data is data which meets the FAIR principles of findability, accessibility, interoperability, and reusability (FAIR). The acronym and principles were defined in a March 2016 paper in the journal '' Scientific Data'' by a consortium of sc ...
(findable, accessible, interoperable, and reusable) as a prerequisite for the reliable implementation of
computer simulation Computer simulation is the running of a mathematical model on a computer, the model being designed to represent the behaviour of, or the outcome of, a real-world or physical system. The reliability of some mathematical models can be determin ...
in biology. To this end, Dräger and his group develop scientific
open-source software Open-source software (OSS) is Software, computer software that is released under a Open-source license, license in which the copyright holder grants users the rights to use, study, change, and Software distribution, distribute the software an ...
, such as
JSBML JSBML (Java Systems Biology Markup Language) is an open-source Java (API) for the SBML (Systems Biology Markup Language ) format. Its API strives to attain a strong similarity to the Java binding of the corresponding library libSBML, but is e ...
or SBSCL. In 2015, the scientific community elected him as an editor for developing the systems biology
file format A file format is a Computer standard, standard way that information is encoded for storage in a computer file. It specifies how bits are used to encode information in a digital storage medium. File formats may be either proprietary format, pr ...
SBML The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. It is a free and open standard with widespread software support and a community of us ...
and in 2018 as an editor for the graphical modeling language
SBGN The Systems Biology Graphical Notation (SBGN) is a standard graphical representation intended to foster the efficient storage, exchange and reuse of information about signaling pathways, metabolic networks, and gene regulatory networks amongst co ...
. In 2016, Dräger was one of the founders of the annual community meeting with a special interest in systems modeling ( SysMod) within the International Society of Computational Biology (ISCB), where he served as the ''de facto'' chairman from 2018 until he stepped down in 2022. During the
COVID-19 Coronavirus disease 2019 (COVID-19) is a contagious disease caused by the coronavirus SARS-CoV-2. In January 2020, the disease spread worldwide, resulting in the COVID-19 pandemic. The symptoms of COVID‑19 can vary but often include fever ...
pandemic, Dräger's work regarding computational modeling of
SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19, the respiratory illness responsible for the COVID-19 pandemic. The virus previously had the Novel coronavirus, provisional nam ...
within human cells raised international interest because it predicted potentially exploitable targets for drug development. One of those is the human enzyme
guanylate kinase In enzymology, a guanylate kinase () is an enzyme that catalyzes the chemical reaction : ATP + GMP \rightleftharpoons ADP + GDP Thus, the two substrates of this enzyme are ATP and GMP, whereas its two products are ADP and GDP. This en ...
. Dräger's ongoing work on this topic focuses on pandemic preparedness.


Commitment and Volunteering

For over three years, he offered a course in
bioinformatics Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, ...
and
systems biology Systems biology is the computational modeling, computational and mathematical analysis and modeling of complex biological systems. It is a biology-based interdisciplinary field of study that focuses on complex interactions within biological system ...
for high school students at the "Otto-Hahn" high school in
Nagold Nagold () is a town in southwestern Germany, bordering the Northern Black Forest. It is located in the '' Landkreis'' (district) of Calw (Germany/Baden-Württemberg). Nagold is recorded for the first time in a historical document dating back to ...
, including mentorship in the Youth Researches competition.


External links

*
Andreas Dräger's research group

Software for Systems Biology

Andreas Dräger's YouTube channel


Appearances in news and public media (selection)


References

{{DEFAULTSORT:Draeger, Andreas German bioinformaticians Systems biologists Network scientists 1980 births Living people Academic staff of the University of Tübingen University of Halle alumni Computational biologists University of Tübingen alumni Keio University alumni