The Allotrope Foundation is a consortium of pharmaceutical companies, instrument vendors and software companies to simplify the exchange of scientific electronic data. It publishes the Allotrope Foundation Ontology (AFO) which is a
controlled vocabulary
A controlled vocabulary provides a way to organize knowledge for subsequent retrieval. Controlled vocabularies are used in subject indexing schemes, subject headings, thesauri, taxonomies and other knowledge organization systems. Controlled v ...
to structure data, the Allotrope Data Models (ADM) and the Allotrope Data Format (ADF) based on
HDF5
Hierarchical Data Format (HDF) is a set of file formats (HDF4, HDF5) designed to store and organize large amounts of data. Originally developed at the U.S. National Center for Supercomputing Applications, it is supported by The HDF Group, a non- ...
which incorporates those for use in practice. Standardization aims at the goal of
FAIR data
FAIR data is data which meets the FAIR principles of findability, accessibility, interoperability, and reusability (FAIR). The acronym and principles were defined in a March 2016 paper in the journal '' Scientific Data'' by a consortium of sc ...
.
[{{cite journal , title=Coming of age of Allotrope: Proceedings from the Fall 2020 Allotrope Connect , journal=Drug Discovery Today , date=1 August 2021 , volume=26 , issue=8 , pages=1922–1928 , doi=10.1016/j.drudis.2021.03.028 , language=en , issn=1359-6446, doi-access=free , last1=Millecam , first1=Todd , last2=Jarrett , first2=Austin J. , last3=Young , first3=Naomi , last4=Vanderwall , first4=Dana E. , last5=Della Corte , first5=Dennis , pmid=33831582 ]
Members
Foundation members are
Amgen
Amgen Inc. (formerly Applied Molecular Genetics Inc.) is an American multinational biopharmaceutical Corporation, company headquartered in Thousand Oaks, California. As one of the world's largest independent biotechnology companies, Amgen has a ...
,
BASF
BASF SE (), an initialism of its original name , is a European Multinational corporation, multinational company and the List of largest chemical producers, largest chemical producer in the world. Its headquarters are located in Ludwigshafen, Ge ...
,
Bayer
Bayer AG (English: , commonly pronounced ; ) is a German multinational pharmaceutical and biotechnology company and is one of the largest pharmaceutical companies and biomedical companies in the world. Headquartered in Leverkusen, Bayer' ...
,
Boehringer Ingelheim
C.H. Boehringer Sohn AG & Co. is the parent company of the Boehringer Ingelheim group, which was founded in 1885 by Albert Boehringer (1861–1939) in Ingelheim am Rhein, Germany. As of 2018, Boehringer Ingelheim is one of the world's List of la ...
,
Dow Chemical Company
The Dow Chemical Company is an American multinational corporation headquartered in Midland, Michigan, United States. The company was among the three largest chemical producers in the world in 2021. It is the operating subsidiary of Dow Inc., ...
,
Genentech
Genentech, Inc. is an American biotechnology corporation headquartered in South San Francisco, California. It operates as an independent subsidiary of holding company Roche. Genentech Research and Early Development operates as an independent cent ...
,
GSK plc
GSK plc (an acronym from its former name GlaxoSmithKline plc) is a British Multinational corporation, multinational Pharmaceutics, pharmaceutical and biotechnology company with headquarters in London. It was established in 2000 by a Mergers an ...
,
Johnson & Johnson
Johnson & Johnson (J&J) is an American multinational pharmaceutical, biotechnology, and medical technologies corporation headquartered in New Brunswick, New Jersey, and publicly traded on the New York Stock Exchange. Its common stock is a c ...
,
Merck & Co.. The partner network consists of ACD Labs,
Agilent Technologies
Agilent Technologies, Inc. is an American global company headquartered in Santa Clara, California, that provides instruments, software, services, and consumables for laboratories. Agilent was established in 1999 as a spin-off from Hewlett-Packar ...
, Benchling,
Bio-Rad Laboratories,
BIOVIA
BIOVIA is a software company headquartered in the United States, with representation in Europe and Asia. It provides software for chemical, materials and bioscience research for the pharmaceutical, biotechnology, consumer packaged goods, aerosp ...
,
Brigham Young University
Brigham Young University (BYU) is a Private education, private research university in Provo, Utah, United States. It was founded in 1875 by religious leader Brigham Young and is the flagship university of the Church Educational System sponsore ...
,
Bruker
Bruker Corporation is an American manufacturer of scientific instruments for molecular and materials research, as well as for industrial and applied analysis. It is headquartered in Billerica, Massachusetts, and is the publicly traded parent comp ...
, Ganymede,
J. Paul Getty Trust
The J. Paul Getty Trust is the world's wealthiest art institution, with an estimated endowment of US$7.7 billion in 2020. Based in Los Angeles, California, it operates the J. Paul Getty Museum, which has two locations—the Getty Center in the ...
, HDF Group, IUTA, IFP Énergies nouvelles, Lablicate,
Paris Dauphine University
Paris Dauphine University - PSL () is a Grande École and public institution of higher education and research based in Paris, France, Collegiate university, constituent college of PSL University. As of 2022, Dauphine has 9,400 students in 8 fields ...
National Physical Laboratory (United Kingdom)
The National Physical Laboratory (NPL) is the national measurement standards laboratory of the United Kingdom. It sets and maintains physical standards for British industry.
Founded in 1900, the NPL is one of the oldest metrology institutes i ...
SCIEX,
Shimadzu Thermo Fisher Scientific
Thermo Fisher Scientific Inc. is an American life science and clinical research company. It is a global supplier of analytical instruments, clinical development solutions, specialty diagnostics, laboratory, pharmaceutical and biotechnology s ...
,
University of Strathclyde
The University of Strathclyde () is a public research university located in Glasgow, Scotland. Founded in 1796 as the Andersonian Institute, it is Glasgow's second-oldest university, having received its royal charter in 1964 as the first techn ...
,
Waters Corporation
Waters Corporation is an American publicly traded analytical laboratory instrument and software company headquartered in Milford, Massachusetts. The company employs more than 7,800 people, with manufacturing facilities located in Milford, Taunto ...
,
United States Pharmacopeia
The ''United States Pharmacopeia'' (''USP'') is a pharmacopeia (compendium of drug information) for the United States published annually by the over 200-year old United States Pharmacopeial Convention (usually also called the USP), a nonprofi ...
, Applied Graphs,
Erasmus MC
Erasmus University Medical Center (Erasmus MC or EMC) is a teaching hospital based in Rotterdam, Netherlands, affiliated with Erasmus University and home to its faculty of medicine. It is the largest and one of the most authoritative scientific uni ...
,
Fraunhofer IPA,
Gustavus Adolphus College
Gustavus Adolphus College ( ) is a private liberal arts college in St. Peter, Minnesota, United States. It was founded in 1862 by Swedish Americans led by Eric Norelius and is affiliated with the Evangelical Lutheran Church in America. Gustavu ...
,
NIST
The National Institute of Standards and Technology (NIST) is an agency of the United States Department of Commerce whose mission is to promote American innovation and industrial competitiveness. NIST's activities are organized into physical s ...
, ScienceOS,
Stanford University
Leland Stanford Junior University, commonly referred to as Stanford University, is a Private university, private research university in Stanford, California, United States. It was founded in 1885 by railroad magnate Leland Stanford (the eighth ...
,
Texas Tech University
Texas Tech University (Texas Tech, Tech, or TTU) is a public university, public research university in Lubbock, Texas, United States. Established on February 10, 1923, and called Texas Technological College until 1969, it is the flagship instit ...
,
Technical University of Dortmund,
University of Cambridge
The University of Cambridge is a Public university, public collegiate university, collegiate research university in Cambridge, England. Founded in 1209, the University of Cambridge is the List of oldest universities in continuous operation, wo ...
,
University of Illinois Chicago
The University of Illinois Chicago (UIC) is a public research university in Chicago, Illinois, United States. Its campus is in the Near West Side community area, adjacent to the Chicago Loop. The second campus established under the Universi ...
,
University of Michigan
The University of Michigan (U-M, U of M, or Michigan) is a public university, public research university in Ann Arbor, Michigan, United States. Founded in 1817, it is the oldest institution of higher education in the state. The University of Mi ...
and
University of Southampton
The University of Southampton (abbreviated as ''Soton'' in post-nominal letters) is a public university, public research university in Southampton, England. Southampton is a founding member of the Russell Group of research-intensive universit ...
.
References
Foundations based in Washington, D.C.