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Mineralization (soil Science)
In soil science, mineralization is the decomposition (i.e., oxidation) of the chemical compounds in organic matter, by which the nutrients in those compounds are released in soluble inorganic forms that may be available to plants. Mineralization is the opposite of immobilization. Mineralization increases the bioavailability of the nutrients that were in the decomposing organic compounds, most notably (because of their quantities) nitrogen, phosphorus, and sulfur. Whether the decomposition of an organic compound will result in mineralization or immobilization is dependent on its concentration proportionate to that of the carbon in the organic matter. As a rule of thumb, if the concentration of a specific element exceeds the needs of the decomposer for biosynthesis or storage, then it will mineralize. Ratio of carbon to nitrogen Whether nitrogen mineralizes or immobilizes depends on the carbon-to-nitrogen ratio (C:N ratio) of the decomposing organic matter.R.G. McLaren & K. Ca ...
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Soil Science
Soil science is the study of soil as a natural resource on the surface of the Earth including soil formation, soil classification, classification and Soil survey, mapping; Soil physics, physical, Soil chemistry, chemical, Soil biology, biological, and fertility properties of soils; and these properties in relation to the use and Soil management, management of soils.Jackson, J. A. (1997). Glossary of Geology (4. ed.). Alexandria, Virginia: American Geological Institute. p 604. The main branches of soil science are ''pedology'' ― the study of formation, chemistry, morphology, and classification of soil ― and ''edaphology'' ― the study of how soils interact with living things, especially plants. Sometimes terms which refer to those branches are used as if synonymous with soil science. The diversity of names associated with this discipline is related to the various associations concerned. Indeed, engineers, agronomy, agronomists, chemists, geologists, physical geography, phys ...
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Carbon-to-nitrogen Ratio
A carbon-to-nitrogen ratio (C/N ratio or C:N ratio) is a stoichiometry, ratio of the mass of carbon to the mass of nitrogen in organic residues. It can, amongst other things, be used in analysing sediments and soil including soil organic matter and soil amendments such as compost. Sediments In the analysis of sediments, C/N ratios are a proxy for paleoclimate research, having different uses whether the sediment cores are terrestrial-based or marine-based. Carbon-to-nitrogen ratios indicate the degree of nitrogen limitation of plants and other organisms. They can identify whether molecules found in the sediment under study come from land-based or algal plants. Further, they can distinguish between different land-based plants, depending on the type of photosynthesis they undergo. Therefore, the C/N ratio serves as a tool for understanding the sources of sedimentary organic matter, which can lead to information about the ecology, climate, and ocean circulation at different times in ...
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Soil Chemistry
Soil chemistry is the study of the Chemistry, chemical characteristics of soil. Soil chemistry is affected by mineral composition, organic matter and Environment (biophysical), environmental factors. In the early 1870s a consulting chemist to the Royal Agricultural Society of England, Royal Agricultural Society in England, named J. Thomas Way, performed many experiments on how soils exchange ions, and is considered the father of soil chemistry. Other scientists who contributed to this branch of ecology include Edmund Ruffin, and Linus Pauling. History Until the late 1960s, soil chemistry focused primarily on chemical reactions in the soil that contribute to pedogenesis or that affect plant growth. Since then, concerns have grown about environmental pollution, organic and inorganic soil contamination and potential ecological health and environmental health risks. Consequently, the emphasis in soil chemistry has shifted from pedology and agricultural soil science to an emphasis on e ...
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Remineralisation
In biogeochemistry, remineralisation (or remineralization) refers to the breakdown or transformation of organic matter (those molecules derived from a biological source) into its simplest inorganic forms. These transformations form a crucial link within ecosystems as they are responsible for liberating the energy stored in organic molecules and recycling matter within the system to be reused as nutrients by other organisms. Remineralisation is normally viewed as it relates to the cycling of the major biologically important elements such as carbon, nitrogen and phosphorus. While crucial to all ecosystems, the process receives special consideration in aquatic settings, where it forms a significant link in the biogeochemical dynamics and cycling of aquatic ecosystems. Role in biogeochemistry The term "remineralization" is used in several contexts across different disciplines. The term is most commonly used in the medicinal and physiological fields, where it describes the dev ...
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Nitrogen Cycle
The nitrogen cycle is the biogeochemical cycle by which nitrogen is converted into multiple chemical forms as it circulates among atmosphere, atmospheric, terrestrial ecosystem, terrestrial, and marine ecosystems. The conversion of nitrogen can be carried out through both biological and physical processes. Important processes in the nitrogen cycle include nitrogen fixation, fixation, ammonification, nitrification, and denitrification. The majority of Earth's atmosphere (78%) is atmospheric nitrogen, making it the largest source of nitrogen. However, atmospheric nitrogen has limited availability for biological use, leading to a scarcity of usable nitrogen in many types of ecosystems. The nitrogen cycle is of particular interest to ecologists because nitrogen availability can affect the rate of key ecosystem processes, including primary production and decomposition. Human activities such as fossil fuel combustion, use of artificial nitrogen fertilizers, and release of nitrogen in w ...
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Nitrification
''Nitrification'' is the biological oxidation of ammonia to nitrate via the intermediary nitrite. Nitrification is an important step in the nitrogen cycle in soil. The process of complete nitrification may occur through separate organisms or entirely within one organism, as in comammox bacteria. The transformation of ammonia to nitrite is usually the rate limiting step of nitrification. Nitrification is an aerobic process performed by small groups of autotrophic bacteria and archaea. Microbiology Ammonia oxidation The process of nitrification begins with the first stage of ammonia oxidation, where ammonia (NH3) or ammonium (NH4+) get converted into nitrite (NO2−). This first stage is sometimes known as nitritation. It is performed by two groups of organisms, ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA). Ammonia-Oxidizing Bacteria Ammonia-Oxidizing Bacteria (AOB) are typically Gram-negative bacteria and belong to Betaproteobacteria and Gammaproteob ...
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Mineral Matter In Plants
Plant nutrition is the study of the chemical elements and Chemical compound, compounds necessary for plant growth and reproduction, plant metabolism and their external supply. In its absence the plant is unable to complete a normal life cycle, or that the element is part of some essential plant constituent or metabolite. This is in accordance with Justus von Liebig, Justus von Liebig's Liebig's law of the minimum, law of the minimum. The total essential plant nutrients include seventeen different elements: carbon, oxygen and hydrogen which are absorbed from the air, whereas other nutrients including nitrogen are typically obtained from the soil (exceptions include some parasitic plant, parasitic or carnivorous plants). Plants must obtain the following mineral nutrients from their growing medium: * The macronutrients: nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), sulfur (S), magnesium (Mg), carbon (C), hydrogen (H), oxygen (O) * The micronutrients (or trace minerals): i ...
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Humus
In classical soil science, humus is the dark organic matter in soil that is formed by the decomposition of plant and animal matter. It is a kind of soil organic matter. It is rich in nutrients and retains moisture in the soil. Humus is the Latin word for "earth" or "ground". In agriculture, "humus" sometimes also is used to describe mature or natural compost extracted from a woodland or other spontaneous source for use as a soil conditioner. It is also used to describe a topsoil horizon that contains organic matter (''humus type'', ''humus form'', or ''humus profile''). Humus has many nutrients that improve the health of soil, nitrogen being the most important. The ratio of carbon to nitrogen ( C:N) of humus commonly ranges between 8:1 and 15:1 with the median being about 12:1. It also significantly improves (decreases) the bulk density of soil. Humus is amorphous and lacks the cellular structure characteristic of organisms. The solid residue of sewage sludge treatment, w ...
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Carbon Cycle
The carbon cycle is a part of the biogeochemical cycle where carbon is exchanged among the biosphere, pedosphere, geosphere, hydrosphere, and atmosphere of Earth. Other major biogeochemical cycles include the nitrogen cycle and the water cycle. Carbon is the main component of biological compounds as well as a major component of many rocks such as limestone. The carbon cycle comprises a sequence of events that are key to making Earth capable of sustaining life. It describes the movement of carbon as it is recycled and reused throughout the biosphere, as well as long-term processes of carbon sequestration (storage) to and release from carbon sinks. To describe the dynamics of the carbon cycle, a distinction can be made between the ''fast'' and ''slow'' carbon cycle. The fast cycle is also referred to as the ''biological carbon cycle''. Fast cycles can complete within years, moving substances from atmosphere to biosphere, then back to the atmosphere. Slow or geological cycles (a ...
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Catabolism
Catabolism () is the set of metabolic pathways that breaks down molecules into smaller units that are either oxidized to release energy or used in other anabolic reactions. Catabolism breaks down large molecules (such as polysaccharides, lipids, nucleic acids, and proteins) into smaller units (such as monosaccharides, fatty acids, nucleotides, and amino acids, respectively). Catabolism is the breaking-down aspect of metabolism, whereas anabolism is the building-up aspect. Cells use the monomers released from breaking down polymers to either construct new polymer molecules or degrade the monomers further to simple waste products, releasing energy. Cellular wastes include lactic acid, acetic acid, carbon dioxide, ammonia, and urea. The formation of these wastes is usually an oxidation process involving a release of chemical free energy, some of which is lost as heat, but the rest of which is used to drive the synthesis of adenosine triphosphate (ATP). This molecule acts as a way ...
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Carbon Dioxide
Carbon dioxide is a chemical compound with the chemical formula . It is made up of molecules that each have one carbon atom covalent bond, covalently double bonded to two oxygen atoms. It is found in a gas state at room temperature and at normally-encountered concentrations it is odorless. As the source of carbon in the carbon cycle, atmospheric is the primary carbon source for life on Earth. In the air, carbon dioxide is transparent to visible light but absorbs infrared, infrared radiation, acting as a greenhouse gas. Carbon dioxide is soluble in water and is found in groundwater, lakes, ice caps, and seawater. It is a trace gas Carbon dioxide in Earth's atmosphere, in Earth's atmosphere at 421 parts per million (ppm), or about 0.042% (as of May 2022) having risen from pre-industrial levels of 280 ppm or about 0.028%. Burning fossil fuels is the main cause of these increased concentrations, which are the primary cause of climate change.IPCC (2022Summary for pol ...
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Nitrate
Nitrate is a polyatomic ion with the chemical formula . salt (chemistry), Salts containing this ion are called nitrates. Nitrates are common components of fertilizers and explosives. Almost all inorganic nitrates are solubility, soluble in water. An example of an insoluble nitrate is bismuth oxynitrate. Chemical structure The nitrate anion is the conjugate acid, conjugate base of nitric acid, consisting of one central nitrogen atom surrounded by three identically bonded oxygen atoms in a trigonal planar arrangement. The nitrate ion carries a formal charge of −1. This charge results from a combination formal charge in which each of the three oxygens carries a − charge, whereas the nitrogen carries a +1 charge, all these adding up to formal charge of the polyatomic nitrate ion. This arrangement is commonly used as an example of Resonance (chemistry), resonance. Like the isoelectronic carbonate ion, the nitrate ion can be represented by three resonance structures: Che ...
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