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Glycerate
Glyceric acid refers to organic compounds with the formula . It occurs naturally and is classified as three-carbon sugar acid. It is chiral. Salts and esters of glyceric acid are known as glycerates. Production Glyceric acid is usually produced by oxidation of glycerol. A typical oxidant is nitric acid, but catalytic oxidations have been developed also: : As glycerol is prochiral, the oxidation of the two terminal alcohol groups gives distinct enantiomers of glyceric acid. Oxidation of both primary alcohols gives tartronic acid: : Biochemistry Several phosphate derivatives of glyceric acid, including 2-phosphoglyceric acid, 3-phosphoglyceric acid, 2,3-bisphosphoglyceric acid, and 1,3-bisphosphoglyceric acid, are intermediates in glycolysis. 3-Phosphoglyceric acid is an intermediate in the biosynthesis of the amino acid serine, which in turn can be used in the synthesis of glycine and cysteine. Glyceric acid occurs naturally in ''Populus tremula'' and ''Ardisia crenata ...
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Glycolysis
Glycolysis is the metabolic pathway that converts glucose () into pyruvic acid, pyruvate and, in most organisms, occurs in the liquid part of cells (the cytosol). The Thermodynamic free energy, free energy released in this process is used to form the high-energy molecules adenosine triphosphate (ATP) and NADH, reduced nicotinamide adenine dinucleotide (NADH). Glycolysis is a sequence of ten reactions catalyzed by enzymes. The wide occurrence of glycolysis in other species indicates that it is an ancient metabolic pathway. Indeed, the reactions that make up glycolysis and its parallel pathway, the pentose phosphate pathway, can occur in the Great Oxygenation Event, oxygen-free conditions of the Archean oceans, also in the absence of enzymes, catalyzed by metal ions, meaning this is a plausible prebiotic pathway for abiogenesis. The most common type of glycolysis is the ''Embden–Meyerhof–Parnas (EMP) pathway'', which was discovered by Gustav Embden, Otto Meyerhof, and Jakub Kar ...
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3-phosphoglyceric Acid
3-Phosphoglyceric acid (3PG, 3-PGA, or PGA) is the conjugate acid of 3-phosphoglycerate or glycerate 3-phosphate (GP or G3P). This glycerate is a biochemically significant metabolic intermediate in both glycolysis and the Calvin-Benson cycle. The anion is often termed as PGA when referring to the Calvin-Benson cycle. In the Calvin-Benson cycle, 3-phosphoglycerate is typically the product of the spontaneous scission of an unstable 6-carbon intermediate formed upon CO2 fixation. Thus, two equivalents of 3-phosphoglycerate are produced for each molecule of CO2 that is fixed. In glycolysis, 3-phosphoglycerate is an intermediate following the dephosphorylation ( reduction) of 1,3-bisphosphoglycerate. Glycolysis In the glycolytic pathway, 1,3-bisphosphoglycerate is dephosphorylated to form 3-phosphoglyceric acid in a coupled reaction producing two ATP via substrate-level phosphorylation. The single phosphate group left on the 3-PGA molecule then moves from an end carbon to a centr ...
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1,3-bisphosphoglyceric Acid
1,3-Bisphosphoglyceric acid (1,3-Bisphosphoglycerate or 1,3BPG) is a 3-carbon organic molecule present in most, if not all, living organisms. It primarily exists as a metabolic intermediate in both glycolysis during respiration and the Calvin cycle during photosynthesis. 1,3BPG is a transitional stage between glycerate 3-phosphate and glyceraldehyde 3-phosphate during the fixation/reduction of CO2. 1,3BPG is also a precursor to 2,3-bisphosphoglycerate which is formed in the Luebering–Rapoport shunt of glycolysis in erythrocytes. Biological structure and role 1,3-Bisphosphoglycerate is the conjugate base of 1,3-bisphosphoglyceric acid. It is phosphorylated at the number 1 and 3 carbons. The result of this phosphorylation gives 1,3BPG important biological properties such as the ability to donate a phosphate group to adenosine diphosphate (ADP) in order to form the energy storage molecule adenosine triphosphate (ATP). In glycolysis As previously mentioned 1,3BPG is a m ...
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2,3-bisphosphoglyceric Acid
2,3-Bisphosphoglyceric acid (conjugate base 2,3-bisphosphoglycerate) (2,3-BPG), also known as 2,3-diphosphoglyceric acid (conjugate base 2,3-diphosphoglycerate) (2,3-DPG), is a three-carbon isomer of the glycolytic intermediate 1,3-bisphosphoglyceric acid (1,3-BPG). -2,3-BPG is present in human red blood cells (RBC; erythrocyte) at approximately 5 mmol/L. It binds with greater affinity to deoxygenated hemoglobin (e.g., when the red blood cell is near respiring tissue) than it does to oxygenated hemoglobin (e.g., in the lungs) due to conformational differences: 2,3-BPG (with an estimated size of about 9 Å) fits in the deoxygenated hemoglobin conformation (with an 11-Angstrom pocket), but not as well in the oxygenated conformation (5 Angstroms). It interacts with deoxygenated hemoglobin beta subunits and decreases the affinity for oxygen and allosterically promotes the release of the remaining oxygen molecules bound to the hemoglobin. Therefore, it enhances the ability of RB ...
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2-phosphoglyceric Acid
2-Phosphoglyceric acid (2PG), or 2-phosphoglycerate, is a glyceric acid which serves as the substrate in the ninth step of glycolysis. It is catalyzed by enolase into phosphoenolpyruvate (PEP), the penultimate step in the conversion of glucose to pyruvate. In glycolysis See also * 3-Phosphoglyceric acid 3-Phosphoglyceric acid (3PG, 3-PGA, or PGA) is the conjugate acid of 3-phosphoglycerate or glycerate 3-phosphate (GP or G3P). This glycerate is a biochemically significant metabolic intermediate in both glycolysis and the Calvin-Benson cycle. Th ... References {{DEFAULTSORT:Phosphoglyceric acid, 2- Organophosphates Glycolysis ...
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Serine
Serine (symbol Ser or S) is an α-amino acid that is used in the biosynthesis of proteins. It contains an α- amino group (which is in the protonated − form under biological conditions), a carboxyl group (which is in the deprotonated − form under biological conditions), and a side chain consisting of a hydroxymethyl group, classifying it as a polar amino acid. It can be synthesized in the human body under normal physiological circumstances, making it a nonessential amino acid. It is encoded by the codons UCU, UCC, UCA, UCG, AGU and AGC. Occurrence This compound is one of the proteinogenic amino acids. Only the L- stereoisomer appears naturally in proteins. It is not essential to the human diet, since it is synthesized in the body from other metabolites, including glycine. Serine was first obtained from silk protein, a particularly rich source, in 1865 by Emil Cramer. Its name is derived from the Latin for silk, '' sericum''. Serine's structure was established in ...
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Glycine
Glycine (symbol Gly or G; ) is an amino acid that has a single hydrogen atom as its side chain. It is the simplest stable amino acid. Glycine is one of the proteinogenic amino acids. It is encoded by all the codons starting with GG (GGU, GGC, GGA, GGG). Glycine disrupts the formation of alpha-helices in secondary protein structure. Its small side chain causes it to favor random coils instead. Glycine is also an inhibitory neurotransmitter – interference with its release within the spinal cord (such as during a '' Clostridium tetani'' infection) can cause spastic paralysis due to uninhibited muscle contraction. It is the only achiral proteinogenic amino acid. It can fit into both hydrophilic and hydrophobic environments, due to its minimal side chain of only one hydrogen atom. History and etymology Glycine was discovered in 1820 by French chemist Henri Braconnot when he hydrolyzed gelatin by boiling it with sulfuric acid. He originally called it "sugar of ...
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Alpha Hydroxy Acids
Alpha hydroxy carboxylic acids, or α-hydroxy carboxylic acids (AHAs), are a group of carboxylic acids featuring a hydroxy group located ''one'' carbon atom away from the acid group. This structural aspect distinguishes them from beta hydroxy acids, where the functional groups are separated by ''two'' carbon atoms. Notable AHAs include glycolic acid, lactic acid, mandelic acid, and citric acid. α-Hydroxy acids are Strong acids, stronger acids compared to their non-alpha hydroxy counterparts, a property enhanced by internal hydrogen bonding. AHAs serve a dual purpose: industrially, they are utilized as additives in animal feed and as precursors for polymer synthesis. In cosmetics, they are commonly used for their ability to chemically exfoliate the skin. Occurrence Aldonic acids, a type of sugar acid, are a class of naturally occurring hydroxycarboxylic acids. They have the general chemical formula, HO2C(CHOH)''n''CH2OH. Gluconic acid, a particularly common aldonic acid, the oxidi ...
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Sugar Acids
In organic chemistry, a sugar acid or acidic sugar is a monosaccharide with a carboxyl group at one end or both ends of its chain. Main classes of sugar acids include: * Aldonic acids, in which the aldehyde group () located at the initial end ( position 1) of an aldose is oxidized. * Ulosonic acids, in which the hydroxymethyl group () at the initial end of a 2-ketose is oxidized creating an α-ketoacid. * Uronic acids, in which the group at the terminal end of an aldose or ketose is oxidized. * Aldaric acids, in which both ends ( and ) of an aldose are oxidized. Examples Examples of sugar acids include: * Aldonic acids ** Glyceric acid (3C) ** Xylonic acid (5C) ** Gluconic acid (6C) ** Ascorbic acid (6C, unsaturated lactone) * Ulosonic acids ** Neuraminic acid (5-amino-3,5-dideoxy-D- ''glycero''-D- ''galacto''-non-2-ulosonic acid) ** Ketodeoxyoctulosonic acid (KDO or 3-deoxy-D- ''manno''-oct-2-ulosonic acid) * Uronic acids ** Glucuronic acid (6C) ** Galacturonic acid (6C) ...
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Ardisia Crenata
''Ardisia crenata'' is a species of flowering plant in the primrose family, Primulaceae, that is native to East Asia. It is known by a variety of names such as Christmas berry, Australian holly, coral ardisia, coral bush, coralberry, coralberry tree, hen's-eyes, and spiceberry. ''A. crenata'' is a compact shrub that reaches , often with a single stem. Leaf, Leaves are dark green, thick, glossy, and have tightly waved edges The flowers are small, white or reddish, fragrant, and form clusters. The fruit is a glossy, bright red drupe. The seeds are able to germinate under a dense Canopy (forest), canopy and are Seed dispersal#Dispersal by animals, dispersed by birds and humans. This invasive species was introduced to the United States in the early twentieth century as an ornamental species. It was observed to have escaped plant, escaped cultivation in 1982. Preparations made from the root of ''Ardisia crenata'' are used as an ingredient in traditional Chinese medicine. Descripti ...
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Populus Tremula
''Populus tremula'' (commonly called aspen, common aspen, Eurasian aspen, European aspen, or quaking aspen) is a species of poplar native to cool temperate regions of the Old World. Description It is a substantial deciduous tree growing to tall by broad, with a trunk attaining over in diameter. The bark is pale greenish-grey and smooth on young trees with dark grey diamond-shaped lenticels, becoming dark grey and fissured on older trees. The adult leaves, produced on branches of mature trees, are nearly round, slightly wider than long, diameter, with a coarsely toothed margin and a laterally flattened petiole long. The flat petiole allows them to tremble in even slight breezes, and is the source of its scientific name, as well as one of its vernacular names "langues de femmes" attributed to Gerard's 17th-century ''Herball''. The leaves on seedlings and fast-growing stems of suckers (root sprouts) are of a different shape, heart-shaped to nearly triangular. They are al ...
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Cysteine
Cysteine (; symbol Cys or C) is a semiessential proteinogenic amino acid with the chemical formula, formula . The thiol side chain in cysteine enables the formation of Disulfide, disulfide bonds, and often participates in enzymatic reactions as a nucleophile. Cysteine is chiral, but both D and L-cysteine are found in nature. LCysteine is a protein monomer in all biota, and D-cysteine acts as a signaling molecule in mammalian nervous systems. Cysteine is named after its discovery in urine, which comes from the urinary bladder or cyst, from Ancient Greek, Greek κύστις ''kýstis'', "bladder". The thiol is susceptible to oxidation to give the disulfide bond, disulfide derivative cystine, which serves an important structural role in many proteins. In this case, the symbol Cyx is sometimes used. The deprotonated form can generally be described by the symbol Cym as well. When used as a food additive, cysteine has the E number E920. Cysteine is Genetic code, encoded by the codo ...
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