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Archelosauria
Archelosauria is a clade grouping turtles and archosaurs (birds and crocodilians) and their fossil relatives, to the exclusion of lepidosaurs (the clade containing lizards, snakes and the tuatara). The majority of phylogenetic analyses based on molecular data (e.g. DNA and proteins) have supported a sister-group relationship between turtles and archosaurs. On the other hand, Archelosauria had not been historically supported by most morphological analyses, which have instead found turtles to either be descendants of parareptiles, early-diverging diapsids outside of Sauria, or close relatives of lepidosaurs within the clade Ankylopoda. Some recent morphological analyses have also found support for Archelosauria. Classification Multiple sequence alignments of DNA and protein sequences and phylogenetic inferences have shown that turtles are the closest living relatives to birds and crocodilians. There are about 1000 ultra-conserved elements in the genome that are unique to turtles ...
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Plesiosaur
The Plesiosauria or plesiosaurs are an Order (biology), order or clade of extinct Mesozoic marine reptiles, belonging to the Sauropterygia. Plesiosaurs first appeared in the latest Triassic Period (geology), Period, possibly in the Rhaetian stage, about 203 million years ago. They became especially common during the Jurassic Period, thriving until their disappearance due to the Cretaceous–Paleogene extinction event at the end of the Cretaceous Period, about 66 million years ago. They had a worldwide oceanic distribution, and some species at least partly inhabited freshwater environments. Plesiosaurs were among the first fossil reptiles discovered. In the beginning of the nineteenth century, scientists realised how distinctive their build was and they were named as a separate order in 1835. The first plesiosaurian genus, the eponymous ''Plesiosaurus'', was named in 1821. Since then, more than a hundred valid species have been described. In the early twenty-first cent ...
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Capitanian
In the geologic timescale, the Capitanian is an age or stage of the Permian. It is also the uppermost or latest of three subdivisions of the Guadalupian Epoch or Series. The Capitanian lasted between and million years ago. It was preceded by the Wordian and followed by the Wuchiapingian.; 2004: ''A Geologic Time Scale 2004'', Cambridge University Press A significant mass extinction event occurred at the end of this stage, which was associated with anoxia and acidification in the oceans and possibly caused by the volcanic eruptions that produced the Emeishan Traps. This extinction event may be related to the much larger Permian–Triassic extinction event that followed about 10 million years later. Stratigraphy The Capitanian Stage was introduced into scientific literature by George Burr Richardson in 1904. The name comes from the Capitan Reef in the Guadalupe Mountains (Texas, United States). The Capitanian was first used as a stratigraphic subdivision of the Guadalupi ...
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Phylogenetic
In biology, phylogenetics () is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as phylogenetic inference. It infers the relationship among organisms based on empirical data and observed heritable traits of DNA sequences, protein amino acid sequences, and morphology. The results are a phylogenetic tree—a diagram depicting the hypothetical relationships among the organisms, reflecting their inferred evolutionary history. The tips of a phylogenetic tree represent the observed entities, which can be living taxa or fossils. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the taxa represented on the tree. An unrooted tree diagram (a network) makes no assumption about directionality of character state transformation, and does not show the origin or "root" of the taxa in question. In addition to their use for inferring phylogenetic pa ...
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Durocryptodira
The Cryptodira (') are a suborder of Testudines that includes most living tortoises and turtles. Cryptodira is commonly called the "Hidden-Neck Turtles" or the "Inside-Neck Turtles". Cryptodira differ from Pleurodira (side-necked turtles) in that they lower their necks and pull the heads straight back into the shells, instead of folding their necks sideways along the body under the shells' marginals. They include among their species freshwater turtles, snapping turtles, tortoises, softshell turtles, and sea turtles. Neck retraction The Cryptodira are characterized by retraction of the head in the vertical plane, which permits for primarily vertical movements and restricted lateral movements outside of the shell. These motions are largely due to the morphology and arrangement of cervical vertebrae. In all recent turtles, the cervical column consists of nine joints and eight vertebrae. Compared to the narrow vertebrae and the closely positioned zygapophyses of the pleurod ...
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Lacerta Agilis
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Testudo Graeca
Greek tortoise (''Testudo graeca''), also known as the spur-thighed tortoise or Moorish tortoise, is a species of tortoise in the family Testudinidae. It is a medium sized herbivorous testudinae, widely distributed in the Mediterranean region. ''Testudo graeca'' is recognized for its longevity, with verified lifespans exceeding 100 years and anecdotal reports suggesting ages over 125 years. Among reptiles, it has one of the largest known genomes. Geographic range The geographic distribution of the Greek tortoise (''Testudo graeca'') includes North Africa, Southern Europe, and Southwest Asia. It is commonly found along the Black Sea coast of the Caucasus, extending from Anapa, Russia, to Sukhumi, Abkhazia, Georgia. Additional populations are present in parts of Georgia, Armenia, Iran, and Azerbaijan. Evolution The oldest confirmed fossil attributed to ''Testudo graeca'' originates from the Early Pliocene of Greece. However, fossils tentatively identified as ''Testudo cf. g ...
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Crocodylus Niloticus
The Nile crocodile (''Crocodylus niloticus'') is a large crocodilian native to freshwater habitats in Africa, where it is present in 26 countries. It is widely distributed in sub-Saharan Africa, occurring mostly in the eastern, southern, and central regions of the continent, and lives in different types of aquatic environments such as lakes, rivers, swamps and marshlands. It occasionally inhabits deltas, brackish lakes and rarely also saltwater. Its range once stretched from the Nile Delta throughout the Nile River. Lake Turkana in Kenya has one of the largest undisturbed Nile crocodile populations. Generally, the adult male Nile crocodile is between in length and weighs . However, specimens exceeding in length and in weight have been recorded. It is the largest predator in Africa, and may be considered the second-largest extant taxon, extant reptile in the world, after the saltwater crocodile (''Crocodylus porosus'').Wood, G. (1983). ''The Guinness Book of Animal Facts and F ...
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Most Recent Common Ancestor
A most recent common ancestor (MRCA), also known as a last common ancestor (LCA), is the most recent individual from which all organisms of a set are inferred to have descended. The most recent common ancestor of a higher taxon is generally assumed to have been a species. The term is also used in reference to the ancestry of groups of genes (haplotypes) rather than organisms. The ancestry of a set of individuals can sometimes be determined by referring to an established pedigree, although this may refer only to patrilineal or matrilineal lines for sexually-reproducing organisms with two parents, four grandparents, etc. However, in general, it is impossible to identify the exact MRCA of a large set of individuals, but an estimate of the time at which the MRCA lived can often be given. Such ''time to most recent common ancestor'' (''TMRCA'') estimates can be given based on DNA test results and established mutation rates as practiced in genetic genealogy, or by reference to a non- ...
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Ultra-conserved Element
An ultraconserved element (UCE) is a region of the genome that is shared between evolutionarily distant taxon, taxa and shows little or no variation between those taxa. These regions and regions adjacent to them (flanking DNA) are useful for tracing the evolutionary history of groups of organisms. Another term for ultraconserved element is ultraconserved region (UCR). The term "ultraconserved element" was originally defined as a genome segment longer than 200 base pairs (bp) that is absolutely conserved, with no insertions or deletions and 100% identity, between orthologous regions of the human, rat, and mouse genomes. 481 of these segments have been identified in the human genome. If ribosomal DNA (rDNA regions) are excluded, these range in size from 200 bp to 781 bp. UCEs are found on all human chromosomes except for 21 and Y. Since its creation, this term's usage has broadened to include more evolutionarily distant species or shorter segments, for example 100 bp instead of 200 bp ...
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Sequence Alignment
In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural biology, structural, or evolutionary relationships between the sequences. Aligned sequences of nucleotide or amino acid residues are typically represented as rows within a matrix (mathematics), matrix. Gaps are inserted between the Residue (chemistry), residues so that identical or similar characters are aligned in successive columns. Sequence alignments are also used for non-biological sequences such as calculating the Edit distance, distance cost between strings in a natural language, or to display financial data. Interpretation If two sequences in an alignment share a common ancestor, mismatches can be interpreted as point mutations and gaps as indels (that is, insertion or deletion mutations) introduced in one or both lineages in the time since they diverged from one another. In sequence ali ...
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Ankylopoda
Ankylopoda was a proposed clade that hypothetically contains turtles and lepidosaurs (tuatara, lizards and snakes) and their fossil relatives. This clade was historically supported based on microRNA analysis as well as some cladistic analyses. However, it was strongly contradicted by molecular evidence which supports Archelosauria (the grouping of turtles and archosaurs), and other recent cladistic analyses have supported Archelosauria over Ankylopoda. Classification The cladogram below follows the most likely result found by another analysis of turtle relationships, this one using only fossil evidence, published by Rainer Schoch and Hans-Dieter Sues in 2015. This study found ''Eunotosaurus'' to be an actual early stem-turtle, though other versions of the analysis found weak support for it as a parareptile Parareptilia ("near-reptiles") is an extinct group of Basal (phylogenetics), basal Sauropsida, sauropsids ("Reptile, reptiles"), traditionally considered the sister tax ...
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Sauria
Sauria is the clade of diapsids containing the most recent common ancestor of Archosauria (which includes crocodilians and birds) and Lepidosauria (which includes squamates and the tuatara), and all its descendants. Since most molecular phylogenies recover turtles as more closely related to archosaurs than to lepidosaurs as part of Archelosauria, Sauria can be considered the crown group of diapsids, or reptiles in general. Depending on the systematics, Sauria includes all modern reptiles or most of them (including birds, a type of archosaur) as well as various extinct groups. Sauria lies within the larger total group Sauropsida, which also contains various stem-reptiles which are more closely related to reptiles than to mammals. Prior to its modern usage, "Sauria" was used as a name for the suborder occupied by lizards, which before 1800 were considered crocodilians. Systematics Sauria was historically used as a partial equivalent for Squamata (which contains lizards and sna ...
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