Timetree (other)
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Timetree (other)
A timetree is a phylogenetic tree scaled to time. It shows the Evolution, evolutionary relationships of a group of organisms in a temporal framework.Hedges SB; Kumar S (2009). Discovering the timetree of life'' in ''The Timetree of Life,'' SB Hedges and S Kumar, Eds. (New York: Oxford University Press, 2009) P. 3-18 Therefore, if living organisms are represented, the branch length between the base of the tree and all leafs (e.g., species) is identical because the same time has elapsed, although extinct organisms can be shown in a timetree. As with a phylogenetic tree, timetrees can be drawn in different shapes: rectangular, circular, or even spiral. The only figure in Darwin's ''On the Origin of Species'', one of the earliest printed evolutionary trees, is a hypothetical timetree. Because the fossil record has always been tightly linked to the geologic record, evolutionary trees of extinct organisms are typically illustrated as timetrees. History In the past, timetrees were ...
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Spiral Timetree
In mathematics, a spiral is a curve which emanates from a point, moving further away as it revolves around the point. It is a subtype of whorled patterns, a broad group that also includes concentric objects. Two-dimensional A two-dimensional, or plane, spiral may be easily described using polar coordinates, where the radius r is a monotonic continuous function of angle \varphi: * r=r(\varphi)\; . The circle would be regarded as a degenerate case (the function not being strictly monotonic, but rather constant). In ''x-y-coordinates'' the curve has the parametric representation: * x=r(\varphi)\cos\varphi \ ,\qquad y=r(\varphi)\sin\varphi\; . Examples Some of the most important sorts of two-dimensional spirals include: * The Archimedean spiral: r=a \varphi * The hyperbolic spiral: r = a/ \varphi * Fermat's spiral: r= a\varphi^ * The lituus: r = a\varphi^ * The logarithmic spiral: r=ae^ * The Cornu spiral or ''clothoid'' * The Fibonacci spiral and golden spiral * The Spi ...
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Phylogenetic Tree
A phylogenetic tree or phylogeny is a graphical representation which shows the evolutionary history between a set of species or taxa during a specific time.Felsenstein J. (2004). ''Inferring Phylogenies'' Sinauer Associates: Sunderland, MA. In other words, it is a branching diagram or a tree showing the evolutionary relationships among various biological species or other entities based upon similarities and differences in their physical or genetic characteristics. In evolutionary biology, all life on Earth is theoretically part of a single phylogenetic tree, indicating common ancestry. Phylogenetics is the study of phylogenetic trees. The main challenge is to find a phylogenetic tree representing optimal evolutionary ancestry between a set of species or taxa. Computational phylogenetics (also phylogeny inference) focuses on the algorithms involved in finding optimal phylogenetic tree in the phylogenetic landscape. Phylogenetic trees may be rooted or unrooted. In a ''rooted'' p ...
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Evolution
Evolution is the change in the heritable Phenotypic trait, characteristics of biological populations over successive generations. It occurs when evolutionary processes such as natural selection and genetic drift act on genetic variation, resulting in certain characteristics becoming more or less common within a population over successive generations. The process of evolution has given rise to biodiversity at every level of biological organisation. The scientific theory of evolution by natural selection was conceived independently by two British naturalists, Charles Darwin and Alfred Russel Wallace, in the mid-19th century as an explanation for why organisms are adapted to their physical and biological environments. The theory was first set out in detail in Darwin's book ''On the Origin of Species''. Evolution by natural selection is established by observable facts about living organisms: (1) more offspring are often produced than can possibly survive; (2) phenotypic variatio ...
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On The Origin Of Species
''On the Origin of Species'' (or, more completely, ''On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life'')The book's full original title was ''On the Origin of Species by Means of Natural Selection, or the Preservation of Favoured Races in the Struggle for Life''. In the 1872 sixth edition, "On" was omitted, so the full title is ''The origin of species by means of natural selection, or the preservation of favoured races in the struggle for life.'' This edition is usually known as ''The Origin of Species.'' The 6th is Darwin's final edition; there were minor modifications in the text of certain subsequent issues. See Freeman, R. B. In Van Wyhe, John, ed. ''Darwin Online: On the Origin of Species'', 2002. is a work of scientific literature by Charles Darwin that is considered to be the foundation of evolutionary biology. It was published on 24 November 1859. Darwin's book introduced the scientific theory that ...
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Fossil Record
A fossil (from Classical Latin , ) is any preserved remains, impression, or trace of any once-living thing from a past geological age. Examples include bones, shells, exoskeletons, stone imprints of animals or microbes, objects preserved in amber, hair, petrified wood and DNA remnants. The totality of fossils is known as the ''fossil record''. Though the fossil record is incomplete, numerous studies have demonstrated that there is enough information available to give a good understanding of the pattern of diversification of life on Earth. In addition, the record can predict and fill gaps such as the discovery of '' Tiktaalik'' in the arctic of Canada. Paleontology includes the study of fossils: their age, method of formation, and evolutionary significance. Specimens are sometimes considered to be fossils if they are over 10,000 years old. The oldest fossils are around 3.48 billion years to 4.1 billion years old. Early edition, published online before print. Th ...
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Geologic Record
The geologic record in stratigraphy, paleontology and other natural sciences refers to the entirety of the layers of rock strata. That is, deposits laid down by volcanism or by deposition of sediment derived from weathering detritus (clays, sands etc.). This includes all its fossil content and the information it yields about the history of the Earth: its past climate, geography, geology and the evolution of life on its surface. According to the law of superposition, sedimentary and volcanic rock layers are deposited on top of each other. They harden over time to become a solidified ( competent) rock column, that may be intruded by igneous rocks and disrupted by tectonic events. Correlating the rock record At a certain locality on the Earth's surface, the rock column provides a cross section of the natural history in the area during the time covered by the age of the rocks. This is sometimes called the ''rock history'' and gives a window into the natural history of the locatio ...
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Chronogram
A chronogram is a sentence or inscription in which specific letters, interpreted as numerals (such as Roman numerals), stand for a particular date when rearranged. The word, meaning "time writing", derives from the Greek words ''chronos'' (χρόνος "time") and ''gramma'' (γράμμα, "letter"). In the ''pure chronogram'', each word contains a numeral; the ''natural chronogram'' shows all numerals in the correct numerical order, e.g. AMORE MATVRITAS = MMVI = 2006. Chronograms in versification are referred to as ''chronosticha'' if they are written in hexameter and ''chronodisticha'' if they are written in distich. In the ancient Indonesian Hindu-Buddhist tradition, especially in ancient Java, chronograms were called ''chandrasengkala'' and usually used in inscriptions to signify a given year in the Saka calendar. Certain words were assigned their specific number, and poetic phrases were formed from these selected words to describe particular events that have their ow ...
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Evolutionary Biology
Evolutionary biology is the subfield of biology that studies the evolutionary processes such as natural selection, common descent, and speciation that produced the diversity of life on Earth. In the 1930s, the discipline of evolutionary biology emerged through what Julian Huxley called the Modern synthesis (20th century), modern synthesis of understanding, from previously unrelated fields of biological research, such as genetics and ecology, systematics, and paleontology. The investigational range of current research has widened to encompass the genetic architecture of adaptation, molecular evolution, and the different forces that contribute to evolution, such as sexual selection, genetic drift, and biogeography. The newer field of evolutionary developmental biology ("evo-devo") investigates how embryogenesis is controlled, thus yielding a wider synthesis that integrates developmental biology with the fields of study covered by the earlier evolutionary synthesis. Subfields ...
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Phylogenetics
In biology, phylogenetics () is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as phylogenetic inference. It infers the relationship among organisms based on empirical data and observed heritable traits of DNA sequences, protein amino acid sequences, and morphology. The results are a phylogenetic tree—a diagram depicting the hypothetical relationships among the organisms, reflecting their inferred evolutionary history. The tips of a phylogenetic tree represent the observed entities, which can be living taxa or fossils. A phylogenetic diagram can be rooted or unrooted. A rooted tree diagram indicates the hypothetical common ancestor of the taxa represented on the tree. An unrooted tree diagram (a network) makes no assumption about directionality of character state transformation, and does not show the origin or "root" of the taxa in question. In addition to their use for inferring phylogenetic pa ...
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