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Thermus Brockianus
''Thermus'' is a genus of thermophilic bacteria. It is one of several bacteria belonging to the ''Deinococcota'' phylum. According to comparative analysis of 16S rRNA, this is one of the most ancient group of bacteria. ''Thermus'' species can be distinguished from other genera in the family ''Thermaceae'' as well as all other bacteria by the presence of eight conserved signature indels found in proteins such as adenylate kinase and replicative DNA helicase as well as 14 conserved signature proteins that are exclusively shared by members of this genus. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and the National Center for Biotechnology Information (NCBI). Between all its species, '' T. thermophilus'' has a special importance as a model organism for basic and applied research. Species incertae sedis: * "''T. anatoliensis''" Kacagan et al. 2016 * "''T. caldophilus''" Taguchi et al. 1983 * "''T. e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermus Aquaticus
''Thermus aquaticus'' is a species of bacteria that can tolerate high temperatures, one of several thermophile, thermophilic bacteria that belong to the ''Deinococcota'' phylum. It is the source of the heat-resistant enzyme Taq polymerase, ''Taq'' DNA polymerase, one of the most important enzymes in molecular biology because of its use in the polymerase chain reaction (PCR) DNA amplification technique. History When studies of biological organisms in hot springs began in the 1960s, scientists thought that the life of thermophilic bacteria could not be sustained in temperatures above about . Soon, however, it was discovered that many bacteria in different springs not only survived, but also thrived in higher temperatures. In 1969, Thomas D. Brock and Hudson Freeze of Indiana University Bloomington, Indiana University reported a new species of thermophile, thermophilic bacteria which they named ''Thermus aquaticus''. The bacterium was first isolated from Mushroom Spring in the Geot ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as automated and manual curation of the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the '' Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. Methodology The genomes used to construct the phyloge ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Bacterial Orders
This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project. Phylogeny National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups. Cladogram was taken from GTDB release 09-RS220 (24 April 2024). Kingdom Bacillati Phylum Chloroflexota * Class "Bathosphaeria" Mehrshad ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Bacteria Genera
This article lists the genera of the bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr .... The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are taken from the GTDB release 08-RS214 (28 April 2023). Phyla List Notes: List of clades needed to be added: * Actinomycetota > Actinomycetia > Actinobacteridae * Bacteroidota > Bacteroidia * Cyanobacteriota > Cyanobacteria * Pseudomonadota (Proteobacteria s.s.) > " Caulobacteria", " Pseudomonadia" See also * Branching order of bacterial phyla (Woese, 1987) * Branching order of bacterial phyla (Gupta, 2001) * Branching order of bacterial phyla (Cavalier-Smith, 2002) * B ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Geyser
A geyser (, ) is a spring with an intermittent water discharge ejected turbulently and accompanied by steam. The formation of geysers is fairly rare and is caused by particular hydrogeological conditions that exist only in a few places on Earth. Generally, geyser field sites are located near active volcanic areas, and the geyser effect is due to the proximity of magma. Surface water works its way down to an average depth of around where it contacts hot rocks. The pressurized water boils, and this causes the geyser effect of hot water and steam spraying out of the geyser's surface vent. A geyser's eruptive activity may change or cease due to ongoing deposition of minerals within their plumbing, exchange of functions with nearby hot springs, earthquake influences, and human intervention. Like many other natural phenomena, geysers are not unique to Earth. Jet-like eruptions, often called cryogeysers, have been observed on several of the moons of the outer Solar System. Due t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermophiles
A thermophile is a type of extremophile that thrives at relatively high temperatures, between . Many thermophiles are archaea, though some of them are bacteria and fungi. Thermophilic eubacteria are suggested to have been among the earliest bacteria. Thermophiles are found in geothermally heated regions of the Earth, such as hot springs like those in Yellowstone National Park and deep sea hydrothermal vents, as well as decaying plant matter, such as peat bogs and compost. They can survive at high temperatures, whereas other bacteria or archaea would be damaged and sometimes killed if exposed to the same temperatures. The enzymes in thermophiles function at high temperatures. Some of these enzymes are used in molecular biology, for example the ''Taq'' polymerase used in PCR. "Thermophile" is derived from the (''thermotita''), meaning heat, and (''philia''), love. Comparative surveys suggest that thermophile diversity is principally driven by pH, not temperature. Classificat ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biotechnology
Biotechnology is a multidisciplinary field that involves the integration of natural sciences and Engineering Science, engineering sciences in order to achieve the application of organisms and parts thereof for products and services. Specialists in the field are known as biotechnologists. The term ''biotechnology'' was first used by Károly Ereky in 1919 to refer to the production of products from raw materials with the aid of living organisms. The core principle of biotechnology involves harnessing biological systems and organisms, such as bacteria, yeast, and plants, to perform specific tasks or produce valuable substances. Biotechnology had a significant impact on many areas of society, from medicine to agriculture to environmental science. One of the key techniques used in biotechnology is genetic engineering, which allows scientists to modify the genetic makeup of organisms to achieve desired outcomes. This can involve inserting genes from one organism into another, and con ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteria
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, Hot spring, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the nitrogen fixation, fixation of nitrogen from the Earth's atmosphere, atmosphere. The nutrient cycle includes the decomposition of cadaver, dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, suc ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermus Antranikianii
''Thermus antranikianii'' is a bacterium belonging to the '' Deinococcota'' phylum, known to be present in hazardous conditions. This species was identified in Iceland, together with '' Thermus igniterrae''. References External linksType strain of ''Thermus antranikianii'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Deinococcota Bacteria described in 2000 {{bacteria-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Thermus Igniterrae
''Thermus igniterrae'' is a bacterium belonging to the '' Deinococcota'' phylum, known to be present in hazardous conditions. This species was identified in Iceland, together with ''Thermus antranikianii ''Thermus antranikianii'' is a bacterium belonging to the '' Deinococcota'' phylum, known to be present in hazardous conditions. This species was identified in Iceland, together with '' Thermus igniterrae''. References External linksType strai ...''. References External linksType strain of ''Thermus igniterrae'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Deinococcota Bacteria described in 2000 {{bacteria-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryote ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
