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Pseudo K-tuple Nucleotide Composition
The Pseudo K-tuple nucleotide composition or PseKNC, is a method for converting a nucleotide sequence (DNA or RNA) into a numerical vector so as to be used in pattern recognition techniques. Generally, the K-tuple can refer to a dinucleotide (when K=2) or a trinucleotide (when K=3). Depending on the instance, the technique can also be called PseDNC or PseTNC. The method was derived from an analogous method in proteomics known as PseAAC (Pseudo Amino Acid Composition) that is applied to protein sequences. Background PseAAC PseKNC was derived from an analogous method in proteomics known as PseAAC (Pseudo Amino Acid Composition). Previously, investigations either relied on sequential models for making predictions of certain protein properties (which, in its simplest case, just refers to the amino acid composition of the protein), or a discrete model which represents a vector of twenty elements, each of which represent the frequency of each amino acid in the protein sample. ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nucleic Acid Sequence
A nucleic acid sequence is a succession of Nucleobase, bases within the nucleotides forming alleles within a DNA (using GACT) or RNA (GACU) molecule. This succession is denoted by a series of a set of five different letters that indicate the order of the nucleotides. By convention, sequences are usually presented from the Directionality (molecular biology), 5' end to the 3' end. For DNA, with its double helix, there are two possible directions for the notated sequence; of these two, the Sense (molecular biology), sense strand is used. Because nucleic acids are normally linear (unbranched) polymers, specifying the sequence is equivalent to defining the covalent structure of the entire molecule. For this reason, the nucleic acid sequence is also termed the Biomolecular structure#Primary structure, primary structure. The sequence represents genetic information. Biological deoxyribonucleic acid represents the information which directs the functions of an organism. Nucleic acids also ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
PseAAC
In molecular biology, pseudo amino acid composition (PseACC) is a method introduced by Kuo-Chen Chou to convert the protein sequence into a numerical vector for enhancing pattern recognition techniques, such as during discrimination between classes of proteins based on their sequences (e.g. between membrane proteins, transmembrane proteins, cytosolic proteins, and other types). This method represented an advance beyond using the immediate amino acid composition (AAC). Instead, the protein is characterized into a matrix of amino-acid frequencies. This matrix incorporates not only amino acid composition, but can also incorporate information from local features of the protein sequence. Due to the success and widespread application of the PseACC method, it was extended to address sequence-order effects in nucleotide compositions, giving rise to a comparative method called PseKNC. Sequential and discrete models Two kinds of models are usually used to represent protein samples: the s ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Protein Sequence
Protein primary structure is the linear sequence of amino acids in a peptide or protein. By convention, the primary structure of a protein is reported starting from the amino-terminal (N) end to the carboxyl-terminal (C) end. Protein biosynthesis is most commonly performed by ribosomes in cells. Peptides can also be synthesized in the laboratory. Protein primary structures can be directly sequenced, or inferred from DNA sequences. Formation Biological Amino acids are polymerised via peptide bonds to form a long backbone, with the different amino acid side chains protruding along it. In biological systems, proteins are produced during translation by a cell's ribosomes. Some organisms can also make short peptides by non-ribosomal peptide synthesis, which often use amino acids other than the encoded 22, and may be cyclised, modified and cross-linked. Chemical Peptides can be synthesised chemically via a range of laboratory methods. Chemical methods typically synt ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nucleotide
Nucleotides are Organic compound, organic molecules composed of a nitrogenous base, a pentose sugar and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both of which are essential biomolecules within all Life, life-forms on Earth. Nucleotides are obtained in the diet and are also synthesized from common Nutrient, nutrients by the liver. Nucleotides are composed of three subunit molecules: a nucleobase, a pentose, five-carbon sugar (ribose or deoxyribose), and a phosphate group consisting of one to three phosphates. The four nucleobases in DNA are guanine, adenine, cytosine, and thymine; in RNA, uracil is used in place of thymine. Nucleotides also play a central role in metabolism at a fundamental, cellular level. They provide chemical energy—in the form of the nucleoside triphosphates, adenosine triphosphate (ATP), guanosine triphosphate (GTP), cytidine triphosphate (CTP), and uridine triph ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
