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Patagioenas Subvinacea Bogotensis
''Patagioenas'' is a genus of New World pigeons whose distinctness from the genus ''Columba'' was long disputed but ultimately confirmed. It is basal to the ''Columba''-''Streptopelia'' radiation with their ancestors diverging from that lineage likely over 8 million years ago. While the biogeographic pattern of this group suggests that the ancestors of typical pigeons and turtle-doves settled the Old World from the Americas, ''Patagioenas'' may also be the offspring of Old World pigeons that radiated into different genera later, given that the cuckoo-doves (''Macropygia'') of Southeast Asia also seem to be closely related.Johnson ''et al.'' (2001), Cheke (2005) Taxonomy The genus ''Patagioenas'' was introduced by German naturalist Ludwig Reichenbach in 1853, with the white-crowned pigeon (''Patagioenas leucocephala'') as the type species. The genus name combines the Ancient Greek ''patageō'' meaning "to clatter" and ''oinas'' meaning "pigeon". There are 17 species of ''Patagi ...
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Band-tailed Pigeon
The band-tailed pigeon (''Patagioenas fasciata'') is a pigeon native to the Americas, and the largest pigeon native to North America. They are a native species throughout the Southwestern United States and Mexico, extending south to Peru. Taxonomy Its closest living relatives are the Chilean pigeon and the ring-tailed pigeon, which form a clade of ''Patagioenas'' with a terminal tail band and iridescent plumage on their necks. There are at least 8 sub-species, and some authorities split this species into the northern band-tailed pigeon (''Patagioenas fasciata'') and the southern band-tailed pigeon (''Patagioenas albilinea''). Use as genetic proxy The band-tailed pigeon is the closest living relative of the extinct passenger pigeon and has been investigated for use in efforts to bring back that species. Distribution and habitat It ranges from British Columbia, Washington, Oregon, California, and southern Arizona south in higher elevations through Mexico and Central Amer ...
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White-crowned Pigeon
The white-crowned pigeon (''Patagioenas leucocephala'') is a fruit and seed-eating species of bird in the dove and pigeon family Columbidae. It is found primarily in the Caribbean. John James Audubon painted these pigeons, including the watercolour painting in his work, ''Birds of America (book), Birds of America'', published in the early 19th century. Taxonomy In the first half of the 18th century the white-crowned pigeon was described and illustrated by several naturalists including John Ray in 1713, Hans Sloane in 1725 and Mark Catesby in 1731. When in 1758 the Swedish naturalist Carl Linnaeus updated his ''Systema Naturae'' for the 10th edition of Systema Naturae, tenth edition, he placed the white-crowned pigeon with all the other pigeons in the genus ''Columba (genus), Columba''. Linnaeus included a brief description, coined the binomial name ''Columba leucocephala'' and cited the earlier authors. The specific epithet combines the Ancient Greek ''leukos'' meaning "white" a ...
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Subgenera
In biology, a subgenus ( subgenera) is a taxonomic rank directly below genus. In the International Code of Zoological Nomenclature, a subgeneric name can be used independently or included in a species name, in parentheses, placed between the generic name and the specific epithet: e.g. the tiger cowry of the Indo-Pacific, ''Cypraea'' (''Cypraea'') ''tigris'' Linnaeus, which belongs to the subgenus ''Cypraea'' of the genus ''Cypraea''. However, it is not mandatory, or even customary, when giving the name of a species, to include the subgeneric name. In the International Code of Nomenclature for algae, fungi, and plants (ICNafp), the subgenus is one of the possible subdivisions of a genus. There is no limit to the number of divisions that are permitted within a genus by adding the prefix "sub-" or in other ways as long as no confusion can result. Article 4 The secondary ranks of section and series are subordinate to subgenus. An example is ''Banksia'' subg. ''Isostylis'', a sub ...
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Morphology (biology)
Morphology (from Ancient Greek μορφή (morphḗ) "form", and λόγος (lógos) "word, study, research") is the study of the form and structure of organisms and their specific structural features. This includes aspects of the outward appearance (shape, structure, color, pattern, size), as well as the form and structure of internal parts like bones and organs, i.e., anatomy. This is in contrast to physiology, which deals primarily with function. Morphology is a branch of life science dealing with the study of the overall structure of an organism or taxon and its component parts. History The etymology of the word "morphology" is from the Ancient Greek (), meaning "form", and (), meaning "word, study, research". While the concept of form in biology, opposed to function, dates back to Aristotle (see Aristotle's biology), the field of morphology was developed by Johann Wolfgang von Goethe (1790) and independently by the German anatomist and physiologist Karl Fried ...
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Intron
An intron is any nucleotide sequence within a gene that is not expressed or operative in the final RNA product. The word ''intron'' is derived from the term ''intragenic region'', i.e., a region inside a gene."The notion of the cistron .e., gene... must be replaced by that of a transcription unit containing regions which will be lost from the mature messenger – which I suggest we call introns (for intragenic regions) – alternating with regions which will be expressed – exons." (Gilbert 1978) The term ''intron'' refers to both the DNA sequence within a gene and the corresponding RNA sequence in RNA transcripts. The non-intron sequences that become joined by this RNA processing to form the mature RNA are called exons. Introns are found in the genes of most eukaryotes and many eukaryotic viruses, and they can be located in both protein-coding genes and genes that function as RNA ( noncoding genes). There are four main types of introns: tRNA introns, group I introns, group I ...
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Fibrinogen
Fibrinogen (coagulation factor I) is a glycoprotein protein complex, complex, produced in the liver, that circulates in the blood of all vertebrates. During tissue and vascular injury, it is converted Enzyme, enzymatically by thrombin to fibrin and then to a fibrin-based Thrombus, blood clot. Fibrin clots function primarily to occlude blood vessels to stop bleeding. Fibrin also binds and reduces the activity of thrombin. This activity, sometimes referred to as antithrombin I, limits clotting. Fibrin also mediates blood platelet and endothelial cell spreading, tissue fibroblast proliferation, Capillary action, capillary tube formation, and angiogenesis and thereby promotes revascularization and wound healing. Reduced and/or dysfunctional fibrinogens occur in various congenital and acquired human List of fibrinogen disorders, fibrinogen-related disorders. These disorders represent a group of rare conditions in which individuals may present with severe episodes of pathological bleed ...
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Nuclear DNA
Nuclear DNA (nDNA), or nuclear deoxyribonucleic acid, is the DNA contained within each cell nucleus of a eukaryotic organism. It encodes for the majority of the genome in eukaryotes, with mitochondrial DNA and plastid DNA coding for the rest. It adheres to Mendelian inheritance, with information coming from two parents, one male and one female—rather than matrilineally (through the mother) as in mitochondrial DNA. Structure Nuclear DNA is a nucleic acid, a polymeric biomolecule or biopolymer, found in the nucleus of eukaryotic cells. Its structure is a double helix, with two strands wound around each other, a structure first described by Francis Crick and James D. Watson (1953) using data collected by Rosalind Franklin. Each strand is a long polymer chain of repeating nucleotides. Each nucleotide is composed of a five-carbon sugar, a phosphate group, and an organic base. Nucleotides are distinguished by their bases: purines, large bases that include adenine and gu ...
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NADH Dehydrogenase
NADH dehydrogenase is an enzyme that converts nicotinamide adenine dinucleotide (NAD) from its reduced form (NADH) to its oxidized form (NAD+). Members of the NADH dehydrogenase family and analogues are commonly systematically named using the format ''NADH:acceptor oxidoreductase''. The chemical reaction these enzymes catalyze is generally represented with the following equation: : NADH + H+ + acceptor NAD+ + reduced acceptor NADH dehydrogenase is a flavoprotein that contains iron-sulfur centers. NADH dehydrogenase is used in the electron transport chain for generation of ATP. The EC term NADH dehydrogenase (quinone) (EC 1.6.5.11) is defined for NADH dehydrogenases that use a quinone The quinones are a class of organic compounds that are formally "derived from aromatic compounds benzene.html" ;"title="uch as benzene">uch as benzene or naphthalene] by conversion of an even number of –CH= groups into –C(=O)– groups with ... (excluding ubiquinone) as the acceptor. ...
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Protein Subunit
In structural biology, a protein subunit is a polypeptide chain or single protein molecule that assembles (or "''coassembles''") with others to form a protein complex. Large assemblies of proteins such as viruses often use a small number of types of protein subunits as building blocks. A subunit is often named with a Greek or Roman letter, and the numbers of this type of subunit in a protein is indicated by a subscript. For example, ATP synthase has a type of subunit called α. Three of these are present in the ATP synthase molecule, leading to the designation α3. Larger groups of subunits can also be specified, like α3β3-hexamer and c-ring. Naturally occurring proteins that have a relatively small number of subunits are referred to as oligomeric.Quote: ''Oligomer molecule: A molecule of intermediate relative molecular mass, the structure of which essentially comprises a small plurality of units derived, actually or conceptually, from molecules of lower relative molecula ...
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Cytochrome C Oxidase
The enzyme cytochrome c oxidase or Complex IV (was , now reclassified as a translocasEC 7.1.1.9 is a large transmembrane protein complex found in bacteria, archaea, and the mitochondria of eukaryotes. It is the last enzyme in the Cellular respiration, respiratory electron transport chain of cell (biology), cells located in the membrane. It receives an electron from each of four cytochrome c molecules and transfers them to one oxygen molecule and four protons, producing two molecules of water. In addition to binding the four protons from the inner aqueous phase, it transports another four protons across the membrane, increasing the transmembrane difference of proton electrochemical potential, which the ATP synthase then uses to synthesize Adenosine triphosphate, ATP. Structure The complex The complex is a large integral membrane protein composed of several Cofactor (biochemistry)#Metal ions, metal prosthetic sites and 13 protein subunits in mammals. In mammals, ten subunits a ...
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Cytochrome B
Cytochrome b is a protein found in the membranes of aerobic cells. In eukaryotic mitochondria (inner membrane) and in aerobic prokaryotes, cytochrome b is a component of respiratory chain complex III () — also known as the bc1 complex or ubiquinol-cytochrome c reductase. In plant chloroplasts and cyanobacteria, there is a homologous protein, cytochrome b6, a component of the plastoquinone-plastocyanin reductase (), also known as the b6f complex. These complexes are involved in electron transport, the pumping of protons to create a proton-motive force ( PMF). This proton gradient is used for the generation of ATP. These complexes play a vital role in cells. Structure and function Cytochrome b/b6 is an integral membrane protein of approximately 400 amino acid residues that probably has 8 transmembrane segments. In plants and cyanobacteria, cytochrome b6 consists of two protein subunits encoded by the petB and petD genes. Cytochrome b/b6 non-covalently binds two heme ...
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MtDNA
Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the DNA contained in a eukaryotic cell; most of the DNA is in the cell nucleus, and, in plants and algae, the DNA also is found in plastids, such as chloroplasts. Mitochondrial DNA is responsible for coding of 13 essential subunits of the complex oxidative phosphorylation (OXPHOS) system which has a role in cellular energy conversion. Human mitochondrial DNA was the first significant part of the human genome to be sequenced. This sequencing revealed that human mtDNA has 16,569 base pairs and encodes 13 proteins. As in other vertebrates, the human mitochondrial genetic code differs slightly from nuclear DNA. Since animal mtDNA evolves faster than nuclear genetic markers, it represents a mainstay of phylogenetics and evolutionary biology. It also permits tra ...
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