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Bioinformatics Software
The list of bioinformatics software tools can be split up according to the license used: * List of proprietary bioinformatics software *List of open-source bioinformatics software Alternatively, here is a categorization according to the respective bioinformatics subfield specialized on: *Sequence analysis software **List of sequence alignment software **List of alignment visualization software **Alignment-free sequence analysis **De novo sequence assemblers **List of gene prediction software ** List of disorder prediction software ** List of Protein subcellular localization prediction tools ** List of phylogenetics software ** List of phylogenetic tree visualization software ** :Metagenomics_software *Structural biology software **List of molecular graphics systems **List of protein-ligand docking software ** List of RNA structure prediction software ** List of software for protein model error verification **List of protein secondary structure prediction programs **List of protein st ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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Bioinformatics
Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combines biology, chemistry, physics, computer science, information engineering, mathematics and statistics to analyze and interpret the biological data. Bioinformatics has been used for '' in silico'' analyses of biological queries using computational and statistical techniques. Bioinformatics includes biological studies that use computer programming as part of their methodology, as well as specific analysis "pipelines" that are repeatedly used, particularly in the field of genomics. Common uses of bioinformatics include the identification of candidates genes and single nucleotide polymorphisms ( SNPs). Often, such identification is made with the aim to better understand the genetic basis of disease, unique adaptations, desirable propertie ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Protein-ligand Docking Software
The number of notable protein-ligand docking programs currently available is high and has been steadily increasing over the last decades. The following list presents an overview of the most common notable programs, listed alphabetically, with indication of the corresponding year of publication, involved organisation or institution, short description, availability of a webservice and the license. This table is comprehensive but not complete. References External links * {{Chemistry software Structural bioinformatics software Molecular modelling software Computational chemistry software Lists of software ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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2D Gel Analysis Software
D, or d, is the fourth letter in the Latin alphabet, used in the modern English alphabet, the alphabets of other western European languages and others worldwide. Its name in English is ''dee'' (pronounced ), plural ''dees''. History The Semitic letter Dāleth may have developed from the logogram for a fish or a door. There are many different Egyptian hieroglyphs that might have inspired this. In Semitic, Ancient Greek and Latin, the letter represented ; in the Etruscan alphabet the letter was archaic, but still retained (see letter B). The equivalent Greek letter is Delta, Δ. Architecture The minuscule (lower-case) form of 'd' consists of a lower-story left bowl and a stem ascender. It most likely developed by gradual variations on the majuscule (capital) form 'D', and today now composed as a stem with a full lobe to the right. In handwriting, it was common to start the arc to the left of the vertical stroke, resulting in a serif at the top of the arc. This seri ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Systems Biology Modelling Software
Systems biology relies heavily on building mathematical models to help understand and make predictions of biological processes. Specialized software to assist in building models has been developed since the arrival of the first digital computers. The following list gives the currently supported software applications available to researchers. The vast majority of modern systems biology modeling software support SBML, which is the de facto standard for exchanging models of biological cellular processes. Some tools also support CellML, a standard used for representing physiological processes. The advantage of using standard formats is that even though a particular software application may eventually become unsupported and even unusable, the models developed by that application can be easily transferred to more modern equivalents. This allows scientific research to be reproducible long after the original publication of the work. Actively supported open-source software applications ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Systems Biology Visualization Software
Online software Applications References {{Reflist Systems A system is a group of interacting or interrelated elements that act according to a set of rules to form a unified whole. A system, surrounded and influenced by its environment, is described by its boundaries, structure and purpose and express ... Systems biology Data visualization software ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Genetic Engineering Software
This article provides a list of genetic engineering software. Cloud-based freemium software VarstationNGS variants processing and analysis tool BaseSpace Variant Interpreterby Illumina Closed-source software * BlueTractorSoftware DNADynamo * Agilent Technologies RFLP Decoder Software, Fish Species * Applied Biosystems GeneMapper * Joint BioEnergy Institute j5 * CLC bio CLC DNA Workbench Software * CLC bio CLC Free Workbench Software * CLC bio CLC Sequence Viewer * CLC bio Protein Workbench Software * DNASTAR Lasergene * Geneious * LabVantage Solutions Inc. LabVantage Sapphire * LabVantage Solutions Inc. LV LIMS * SnapGene * ThGeneRecommender Open-source software * Autodesk Genetic Constructor (suspended) * BIOFAB Clotho BIOFAB Edition * BIOFAB BIOFAB Studio EGF CodonsanEGF CUBA(Collection of Useful Biological Apps) by thEdinburgh Genome Foundry* Integrative Genomics Viewer (part of Google Genomics) * Mengqvist's DNApy See also * Geppetto (3D engine); an open-source 3D e ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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Bioinformatics Workflow Management System
A bioinformatics workflow management system is a specialized form of workflow management system designed specifically to compose and execute a series of computational or data manipulation steps, or a workflow, that relate to bioinformatics. There are currently many different workflow systems. Some have been developed more generally as scientific workflow systems for use by scientists from many different disciplines like astronomy and earth science. All such systems are based on an abstract representation of how a computation proceeds in the form of a directed graph, where each node represents a task to be executed and edges represent either data flow or execution dependencies between different tasks. Each system typically provides a visual front-end, allowing the user to build and modify complex applications with little or no programming expertise. Examples In alphabetical order, some examples of bioinformatics workflow management systems include: * Anduril bioinformatics and ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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Structural Alignment Software
This list of structural comparison and alignment software is a compilation of software tools and web portals used in pairwise or multiple structural comparison and structural alignment. Structural comparison and alignment Key map: * Class: :* Cα -- Backbone Atom (Cα) Alignment; :* AllA -- All Atoms Alignment; :* SSE -- Secondary Structure Elements Alignment; :* Seq -- Sequence-based alignment :* Pair -- Pairwise Alignment (2 structures *only*); :* Multi -- Multiple Structure Alignment (MStA); :* C-Map -- Contact Map :* Surf -- Connolly Molecular Surface Alignment :* SASA -- Solvent Accessible Surface Area :* Dihed -- Dihedral Backbone Angles :* PB -- Protein Blocks * Flexible: :* No -- Only rigid-body transformations are considered between the structures being compared. :* Yes -- The method allows for some flexibility within the structures being compared, such as movements around hinge regions. References [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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:Category:Molecular Dynamics Software
This category contains pages about software used for molecular dynamics Molecular dynamics (MD) is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of th ... simulations. Molecular dynamics Physics software Computational chemistry software Molecular modelling software ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Protein Structure Prediction Software
This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading Protein threading, also known as fold recognition, is a method of protein modeling which is used to model those proteins which have the same fold as proteins of known structures, but do not have homologous proteins with known structure. It differs ..., ''ab initio'' methods, secondary structure prediction, and transmembrane helix and signal peptide prediction. Software list Below is a list which separates programs according to the method used for structure prediction. Homology modeling Threading/fold recognition ''Ab initio'' structure prediction Secondary structure prediction Detailed list of programs can be found at List of protein secondary structure prediction programs See also * List of protein secondary structure prediction programs * Comparison of nucleic acid simulation software * Li ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Protein Secondary Structure Prediction Programs
List of notable protein secondary structure prediction programs See also * List of protein structure prediction software * Protein structure prediction Protein structure prediction is the inference of the three-dimensional structure of a protein from its amino acid sequence—that is, the prediction of its secondary and tertiary structure from primary structure. Structure prediction is differen ... {{DEFAULTSORT:Protein Structure Prediction Structural bioinformatics software Protein structure Protein methods ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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List Of Software For Protein Model Error Verification
This list of software for protein model error verification is a compilation of bioinformatics software frequently employed to check experimental and theoretical models of protein structure Protein structure is the molecular geometry, three-dimensional arrangement of atoms in an amino acid-chain molecule. Proteins are polymers specifically polypeptides formed from sequences of amino acids, the monomers of the polymer. A single ami ...s for errors. {{DEFAULTSORT:Protein Model Error Verification Lists of software Structural bioinformatics software ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |