Aquibacter Zeaxanthinifaciens
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Aquibacter Zeaxanthinifaciens
''Aquibacter'' is a genus from the family of Flavobacteriaceae Flavobacteriaceae is a family of rod-shaped gram negative bacteria. The family contains many environmental bacteria, with some species being potential pathogens. History The family of ''Flavobacteriaceae'' was first proposed by Reichenbach in 1 ..., with one known species ('' Aquibacter zeaxanthinifaciens''). References Further reading * Flavobacteria Monotypic bacteria genera Bacteria genera {{Flavobacteria-stub ...
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Bacteria
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, Hot spring, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the nitrogen fixation, fixation of nitrogen from the Earth's atmosphere, atmosphere. The nutrient cycle includes the decomposition of cadaver, dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, suc ...
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Bacteroidota
The phylum (biology), phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative bacteria, Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Although some ''Bacteroides'' spp. can be Opportunistic Pathogens, opportunistic pathogens, many ''Bacteroidota'' are Symbiotic bacteria, symbiotic species highly adjusted to the gastrointestinal tract. ''Bacteroides'' are highly abundant in intestines, reaching up to 1011 cells g−1 of intestinal material. They perform metabolic conversions that are essential for the host, such as degradation of proteins or complex sugar polymers. ''Bacteroidota'' colonize the gastrointestinal tract already in infants, as non-digestible Human milk oligosaccharide, oligosaccharides in mother milk support the growth of both ''Bacteroides'' and ''Bifidoba ...
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Flavobacteriia
The class Flavobacteriia is composed of a single class of environmental bacteria. It contains the family Flavobacteriaceae, which is the largest family in the phylum Bacteroidota. This class is widely distributed in soil, fresh, and seawater habitats. The name is often spelt Flavobacteria, but was officially named Flavobacteriia in 2012. Flavobacteriia are gram-negative aerobic rods, 2–5 μm long, 0.1–0.5 μm wide, with rounded or tapered ends. They form circular cream to orange coloured colonies on agar, and are typically simple to successfully culture. Flavobacteriia is a chemoorganotroph and are known for their ability to mineralize or degrade dissolved organic matter of high molecular weight and particulate plant material. Flavobacteriia have impacts on both the environment and human society, as they are able to cause diseases in many organisms. They are important in the decomposition of organic matter and pollutants, and are key members in the formation of marin ...
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Flavobacteriales
The order Flavobacteriales comprises several families of environmental bacteria. Comparative genomics and molecular signatures ''Flavobacteriales'' is of one of the orders from the phylum ''Bacteroidota''. Comparative genomic studies have identified several conserved indels, as well as 27 proteins that are uniquely shared by different sequenced Flavobacteriales and Bacteroidota species supporting this inference. Additionally, these studies have also identified 38 proteins that seem to be specific for the species from the order ''Flavobacteriales''. Of these proteins, 26 were present in all sequenced species, while the remaining 12 were missing in only one or two species. These signature proteins provide potential molecular markers for this order. Several proteins have also been identified which are unique to the ''Flavobacteriales'' and '' Bacteroidales'' orders, indicating the species from these two orders shared a common ancestor exclusive of other ''Bacteroidota''. Phylogeny ...
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Flavobacteriaceae
Flavobacteriaceae is a family of rod-shaped gram negative bacteria. The family contains many environmental bacteria, with some species being potential pathogens. History The family of ''Flavobacteriaceae'' was first proposed by Reichenbach in 1989, it was approved by the IJSEM in 1992. The description of the family was emended several times in 1996 and 2002. In 2020, the family was split, with several genera moved to the newly established family of '' Weeksellaceae''. Biology Species of the ''Flavobacteriaceae'' are predominantly rod-shaped and stain gram-negative. Many species in the ''Flavobacteriaceae'' are motile, with most non-motile species formerly placed in the family now being placed in the '' Weeksellaceae''. Most species are aerobic, while some are microaerobic to anaerobic; for example '' Capnocytophaga'' and '' Coenonia''. Several members of the family are considered halophilic or psychrotolerant. The predominant respiratory quinone is menaquinone-6. The ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy image:Hierarchical clustering diagram.png, 280px, Generalized scheme of taxonomy Taxonomy is a practice and science concerned with classification or categorization. Typically, there are two parts to it: the development of an underlying scheme o ... of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service and since 2022 LPSN is interconnected with the Type (Strain) Genome Server (TYGS), DSMZ's high-throughput platform for accurate genome-based taxonomy. See also * Code o ...
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Species
A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), classification and a taxonomic rank of an organism, as well as a unit of biodiversity. Other ways of defining species include their karyotype, DNA sequence, morphology (biology), morphology, behaviour, or ecological niche. In addition, palaeontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. About 14% of these had been described by 2011. All species (except viruses) are given a binomial nomenclature, two-part name, a "binomen". The first part of a binomen is the name of a genus to which the species belongs. The second part is called the specific name (zoology), specific name or the specific ...
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Aquibacter Zeaxanthinifaciens
''Aquibacter'' is a genus from the family of Flavobacteriaceae Flavobacteriaceae is a family of rod-shaped gram negative bacteria. The family contains many environmental bacteria, with some species being potential pathogens. History The family of ''Flavobacteriaceae'' was first proposed by Reichenbach in 1 ..., with one known species ('' Aquibacter zeaxanthinifaciens''). References Further reading * Flavobacteria Monotypic bacteria genera Bacteria genera {{Flavobacteria-stub ...
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Flavobacteria
The class Flavobacteriia is composed of a single class of environmental bacteria. It contains the family Flavobacteriaceae, which is the largest family in the phylum Bacteroidota. This class is widely distributed in soil, fresh, and seawater habitats. The name is often spelt Flavobacteria, but was officially named Flavobacteriia in 2012. Flavobacteriia are gram-negative aerobic rods, 2–5 μm long, 0.1–0.5 μm wide, with rounded or tapered ends. They form circular cream to orange coloured colonies on agar, and are typically simple to successfully culture. Flavobacteriia is a chemoorganotroph and are known for their ability to mineralize or degrade dissolved organic matter of high molecular weight and particulate plant material. Flavobacteriia have impacts on both the environment and human society, as they are able to cause diseases in many organisms. They are important in the decomposition of organic matter and pollutants, and are key members in the formation of marin ...
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Monotypic Bacteria Genera
In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unispecific" or "monospecific" is sometimes preferred. In botanical nomenclature, a monotypic genus is a genus in the special case where a genus and a single species are simultaneously described. Theoretical implications Monotypic taxa present several important theoretical challenges in biological classification. One key issue is known as "Gregg's Paradox": if a single species is the only member of multiple hierarchical levels (for example, being the only species in its genus, which is the only genus in its family), then each level needs a distinct definition to maintain logical structure. Otherwise, the different taxonomic ranks become effectively identical, which creates problems for organizing biological diversity in a hierarchical system. ...
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