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Agent-based Model In Biology
Agent-based models have many applications in biology, primarily due to the characteristics of the modeling method. Agent-based modeling is a rule-based, computational modeling methodology that focuses on rules and interactions among the individual components or the agents of the matrix . The goal of this modeling method is to generate populations of the system components of interest and simulate their interactions in a virtual world. Agent-based models start with rules for behavior and seek to reconstruct, through computational instantiation of those behavioral rules, the observed patterns of behavior. Characteristics Several of the characteristics of agent-based models important to biological studies include: Modular structure The behavior of an agent-based model is defined by the rules of its agents. Existing agent rules can be modified or new agents can be added without having to modify the entire model. Emergent properties Through the use of the individual agents that ...
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Agent-based Model
An agent-based model (ABM) is a computational model for simulating the actions and interactions of autonomous agents (both individual or collective entities such as organizations or groups) in order to understand the behavior of a system and what governs its outcomes. It combines elements of game theory, complex systems, emergence, computational sociology, multi-agent systems, and evolutionary programming. Monte Carlo methods are used to understand the stochasticity of these models. Particularly within ecology, ABMs are also called individual-based models (IBMs). A review of recent literature on individual-based models, agent-based models, and multiagent systems shows that ABMs are used in many scientific domains including biology, ecology and social science. Agent-based modeling is related to, but distinct from, the concept of multi-agent systems or multi-agent simulation in that the goal of ABM is to search for explanatory insight into the collective behavior of agents ...
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Crop
A crop is a plant that can be grown and harvested extensively for profit or subsistence. In other words, a crop is a plant or plant product that is grown for a specific purpose such as food, Fiber, fibre, or fuel. When plants of the same species are cultivated in rows or other systematic arrangements, it is called crop field or crop cultivation. Most crops are harvested as food for humans or fodder for livestock. Important non-food crops include horticulture, floriculture, and industrial crops. Horticulture crops include plants used for other crops (e.g. fruit trees). Floriculture crops include bedding plants, houseplants, flowering garden and pot plants, cut cultivated greens, and cut flowers. Industrial crops are produced for clothing (fiber crops e.g. cotton), biofuel (energy crops, algae fuel), or medicine (medicinal plants). Production There was an increase in global production of primary crops by 56% between 2000 and 2022 to 9.6 billion tonnes, which represents a 0 ...
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Humber
The Humber is a large tidal estuary on the east coast of Northern England. It is formed at Trent Falls, Faxfleet, by the confluence of the tidal rivers River Ouse, Yorkshire, Ouse and River Trent, Trent. From there to the North Sea, it forms part of the boundary between the East Riding of Yorkshire on the north bank and North Lincolnshire on the south bank. Also known as the River Humber, it is tidal its entire length. Below Trent Falls, the Humber passes the junction with the Market Weighton Canal on the north shore, the confluence of the River Ancholme on the south shore; between North Ferriby and South Ferriby and under the Humber Bridge; between Barton-upon-Humber on the south bank and Kingston upon Hull on the north bank (where the River Hull joins), then meets the North Sea between Cleethorpes on the Lincolnshire side and the long and thin headland of Spurn, Spurn Head to the north. Ports on the Humber include the Port of Hull, the Port of Grimsby and the Port of Immin ...
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Yorkshire
Yorkshire ( ) is an area of Northern England which was History of Yorkshire, historically a county. Despite no longer being used for administration, Yorkshire retains a strong regional identity. The county was named after its county town, the city of York. The south-west of Yorkshire is densely populated, and includes the cities of Leeds, Sheffield, Bradford, Doncaster and Wakefield. The north and east of the county are more sparsely populated, however the north-east includes the southern part of the Teesside conurbation, and the port city of Kingston upon Hull is located in the south-east. York is located near the centre of the county. Yorkshire has a Yorkshire Coast, coastline to the North Sea to the east. The North York Moors occupy the north-east of the county, and the centre contains the Vale of Mowbray in the north and the Vale of York in the south. The west contains part of the Pennines, which form the Yorkshire Dales in the north-west. The county was historically borde ...
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North Yorkshire
North Yorkshire is a Ceremonial counties of England, ceremonial county in Northern England.The Unitary authorities of England, unitary authority areas of City of York, York and North Yorkshire (district), North Yorkshire are in Yorkshire and the Humber, and Borough of Middlesbrough, Middlesbrough, Redcar and Cleveland, and Stockton-on-Tees Borough Council, Stockton-on-Tees are in North East England. It borders County Durham to the north, the North Sea to the east, the East Riding of Yorkshire to the south-east, South Yorkshire to the south, West Yorkshire to the south-west, and Cumbria and Lancashire to the west. The county is the largest in England by land area, at , and had a population of 1,158,816 in 2021. The largest settlements are Middlesbrough (148,215) in the north-east and the city of York (141,685) in the south. Middlesbrough is part of the Teesside built-up area, which extends into County Durham and had a total population of 376,663 in 2011. The remainder of the cou ...
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Rhopalosiphum Padi
Bird cherry-oat aphid (''Rhopalosiphum padi'') is an aphid in the superfamily Aphidoidea in the order Hemiptera. It is a true bug and sucks sap from plants. It is considered a major pest in cereal crops, especially in temperate regions, as well as other hosts in parts of Northern Europe. It is the principal vector of many viruses in economically important field crops. Host plants and distribution ''R. padi'' has a worldwide distribution and according to research, they can colonize a number of dicotyledon host plants, although their preference is within monocotyledon plant groups much like the closely related '' R. maidis'' and '' R. rufiabdominale''. The main plant hosts are categorized and listed below but as the name suggests, the primary host is ''Prunus padus'', where it overwinters as eggs. In Northern America, it is found to overwinter on ''Prunus virginiana'' (common choke-cherry). In spring, it attacks all major cereals and pasture grasses; particularly barley, oats, whe ...
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Population Dynamics
Population dynamics is the type of mathematics used to model and study the size and age composition of populations as dynamical systems. Population dynamics is a branch of mathematical biology, and uses mathematical techniques such as differential equations to model behaviour. Population dynamics is also closely related to other mathematical biology fields such as epidemiology, and also uses techniques from evolutionary game theory in its modelling. History Population dynamics has traditionally been the dominant branch of mathematical biology, which has a history of more than 220 years,Malthus, Thomas Robert. An Essay on the Principle of Population: Library of Economics although over the last century the scope of mathematical biology has greatly expanded. The beginning of population dynamics is widely regarded as the work of Malthus, formulated as the Malthusian growth model. According to Malthus, assuming that the conditions (the environment) remain constant ('' ceteris pari ...
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NetLogo
NetLogo is a programming language and integrated development environment An integrated development environment (IDE) is a Application software, software application that provides comprehensive facilities for software development. An IDE normally consists of at least a source-code editor, build automation tools, an ... (IDE) for agent-based modeling. About NetLogo was designed by Uri Wilensky, in the spirit of the programming language Logo (programming language), Logo, to be "low threshold and no ceiling". It teaches programming concepts using Agent-based model, agents in the form of ''turtles'', ''patches'', ''links'' and the ''observer''. NetLogo was designed with multiple audiences in mind, in particular: teaching children in the education community, and for Subject-matter expert, domain experts without a programming background to model related phenomena. Thousands of scientific articles have been published using NetLogo. The NetLogo environment enables exploration of ...
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Heterogeneous
Homogeneity and heterogeneity are concepts relating to the uniformity of a substance, process or image. A homogeneous feature is uniform in composition or character (i.e., color, shape, size, weight, height, distribution, texture, language, income, disease, temperature, radioactivity, architectural design, etc.); one that is heterogeneous is distinctly nonuniform in at least one of these qualities. Etymology and spelling The words ''homogeneous'' and ''heterogeneous'' come from Medieval Latin ''homogeneus'' and ''heterogeneus'', from Ancient Greek ὁμογενής (''homogenēs'') and ἑτερογενής (''heterogenēs''), from ὁμός (''homos'', "same") and ἕτερος (''heteros'', "other, another, different") respectively, followed by γένος (''genos'', "kind"); -ous is an adjectival suffix. Alternate spellings omitting the last ''-e-'' (and the associated pronunciations) are common, but mistaken: ''homogenous'' is strictly a biological/pathological term whic ...
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Beetle
Beetles are insects that form the Taxonomic rank, order Coleoptera (), in the superorder Holometabola. Their front pair of wings are hardened into wing-cases, elytra, distinguishing them from most other insects. The Coleoptera, with about 400,000 described species, is the largest of all orders, constituting almost 40% of described arthropods and 25% of all known animal species; new species are discovered frequently, with estimates suggesting that there are between 0.9 and 2.1 million total species. However, the number of beetle species is challenged by the number of species in Fly, dipterans (flies) and hymenopterans (wasps). Found in almost every habitat except the sea and the polar regions, they interact with their ecosystems in several ways: beetles often feed on plants and fungi, break down animal and plant debris, and eat other invertebrates. Some species are serious agricultural pests, such as the Colorado potato beetle, while others such as Coccinellidae (ladybirds or ...
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Otay Mesa, California
Otay Mesa ( ) is a community in the southern exclave of San Diego, California, just north of the U.S.–Mexico border. It is bordered by the Otay River Valley and the city of Chula Vista on the north; Interstate 805 and the neighborhoods of Ocean View Hills and San Ysidro on the west; unincorporated San Diego County on the north and east including East Otay Mesa and the San Ysidro Mountains; and the Otay Centenario borough of Tijuana, Mexico, on the south. Major thoroughfares include Otay Mesa Road/ California State Route 905, Otay Valley Road/Heritage Road, Siempre Viva Road, and California State Route 125. Otay Mesa is the second-least walkable neighborhood of San Diego. History ''Otay'' is derived from the Kumeyaay language. Although its meaning is disputed, possible derivations include "otai", meaning "brushy"; "Tou-ti" meaning "big mountain"; or "etaay" meaning "big". ''Mesa'' is the Spanish word for plateau, table or tableland. Aviation pioneer John J. Montgomer ...
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Calexico, California
Calexico () is a city in southern Imperial County, California. Situated on the Mexico–United States border, Mexican border, it is linked economically with the much larger city of Mexicali, the capital of the Mexican state of Baja California. It is about east of San Diego and west of Yuma, Arizona. Calexico, along with six other incorporated Imperial County cities, forms part of the larger populated area known as the Imperial Valley. First explored by Europeans in the 18th century, Calexico began as a small tent community which was ultimately incorporated in 1908. Etymology The name of the city is a portmanteau of California and Mexico. The originally proposed names were ''Santo Tomas'' or ''Thomasville.'' Mexicali is a similarly named city directly across the international border from Calexico, its name being a portmanteau of the words "Mexico" and "California." History The expedition of Spanish explorer Juan Bautista de Anza traveled through the area some time between 17 ...
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