Eran Elhaik
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Eran Elhaik (born 1980) is an Israeli-American
geneticist A geneticist is a biologist or physician who studies genetics, the science of genes, heredity, and variation of organisms. A geneticist can be employed as a scientist or a lecturer. Geneticists may perform general research on genetic processes ...
and
bioinformatician Bioinformatics () is an interdisciplinary field that develops methods and software tools for understanding biological data, in particular when the data sets are large and complex. As an interdisciplinary field of science, bioinformatics combine ...
, and an associate professor of bioinformatics at
Lund University , motto = Ad utrumque , mottoeng = Prepared for both , established = , type = Public research university , budget = SEK 9 billion computational Computation is any type of arithmetic or non-arithmetic calculation that follows a well-defined model (e.g., an algorithm). Mechanical or electronic devices (or, historically, people) that perform computations are known as ''computers''. An espe ...
,
statistical Statistics (from German: '' Statistik'', "description of a state, a country") is the discipline that concerns the collection, organization, analysis, interpretation, and presentation of data. In applying statistics to a scientific, industr ...
,
epidemiological Epidemiology is the study and analysis of the distribution (who, when, and where), patterns and determinants of health and disease conditions in a defined population. It is a cornerstone of public health, and shapes policy decisions and evid ...
and
mathematical Mathematics is an area of knowledge that includes the topics of numbers, formulas and related structures, shapes and the spaces in which they are contained, and quantities and their changes. These topics are represented in modern mathematics ...
approaches to fields such as
complex disorders A disease is a particular abnormal condition that negatively affects the structure or function of all or part of an organism, and that is not immediately due to any external injury. Diseases are often known to be medical conditions that a ...
,
population genetics Population genetics is a subfield of genetics that deals with genetic differences within and between populations, and is a part of evolutionary biology. Studies in this branch of biology examine such phenomena as adaptation, speciation, and po ...
, personalised medicine,
molecular evolution Molecular evolution is the process of change in the sequence composition of cellular molecules such as DNA, RNA, and proteins across generations. The field of molecular evolution uses principles of evolutionary biology and population genet ...
,
genomics Genomics is an interdisciplinary field of biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, three-dim ...
,
paleogenomics Paleogenomics is a field of science based on the reconstruction and analysis of genomic information in extinct species. Improved methods for the extraction of ancient DNA (aDNA) from museum artifacts, ice cores, archeological or paleontological site ...
and
epigenetics In biology, epigenetics is the study of stable phenotypic changes (known as ''marks'') that do not involve alterations in the DNA sequence. The Greek prefix '' epi-'' ( "over, outside of, around") in ''epigenetics'' implies features that are ...
.


Career

After completing undergraduate studies in Israel, he obtained a
PhD PHD or PhD may refer to: * Doctor of Philosophy (PhD), an academic qualification Entertainment * '' PhD: Phantasy Degree'', a Korean comic series * '' Piled Higher and Deeper'', a web comic * Ph.D. (band), a 1980s British group ** Ph.D. (Ph.D. al ...
in
molecular evolution Molecular evolution is the process of change in the sequence composition of cellular molecules such as DNA, RNA, and proteins across generations. The field of molecular evolution uses principles of evolutionary biology and population genet ...
under the supervision of
Dan Graur Dan Graur \ˈɡra.ur\ (born July 24, 1953, in Piatra Neamț) is a Romanian-American scientist working in the field of molecular evolution. He is a Moores Professor at the University of Houston and Professor Emeritus of Zoology at Tel Aviv University ...
at the
University of Houston The University of Houston (UH) is a Public university, public research university in Houston, Texas. Founded in 1927, UH is a member of the University of Houston System and the List of universities in Texas by enrollment, university in Texas ...
in 2009, followed by postdoctoral research fellowships at the
Johns Hopkins University Johns Hopkins University (Johns Hopkins, Hopkins, or JHU) is a private research university in Baltimore, Maryland. Founded in 1876, Johns Hopkins is the oldest research university in the United States and in the western hemisphere. It consi ...
School of Medicine and School of Public Health. In 2011 the
Genographic Project The Genographic Project, launched on 13 April 2005 by the National Geographic Society and IBM, was a genetic anthropological study (sales discontinued on 31 May 2019) that aimed to map historical human migrations patterns by collecting and ...
, after concerns emerged about the retention of private genetic data of individuals in surveyed populations, hired Elhaik and asked him to design a method that would enable analysts to extract only historical information from the accumulating genomic evidence of populations in such a way that individual's right to keep their private health profile was collected from individuals, without infringing their personal health data private.' From 2014 to 2019 he worked at the
University of Sheffield , mottoeng = To discover the causes of things , established = – University of SheffieldPredecessor institutions: – Sheffield Medical School – Firth College – Sheffield Technical School – University College of Sheffield , type = Pu ...
Department of Animal and Plant Sciences in the United Kingdom. Since 2019 he has been an associate professor of bioinformatics at the Department of Biology at
Lund University , motto = Ad utrumque , mottoeng = Prepared for both , established = , type = Public research university , budget = SEK 9 billion compositional domain A compositional domain in genetics is a region of DNA with a distinct guanine (G) and cytosine (C) G-C and C-G content (collectively GC content). The homogeneity of compositional domains is compared to that of the chromosome on which they reside ...
model that describes the compositional organization of
animal Animals are multicellular, eukaryotic organisms in the biological kingdom Animalia. With few exceptions, animals consume organic material, breathe oxygen, are able to move, can reproduce sexually, and go through an ontogenetic stage ...
genomes. In the field of complex disorders, he proposed that the
allostatic load Allostatic load is "the wear and tear on the body" which accumulates as an individual is exposed to repeated or chronic stress. The term was coined by Bruce McEwen and Eliot Stellar in 1993. It represents the physiological consequences of chron ...
theory could be used to explain
bipolar disorder Bipolar disorder, previously known as manic depression, is a mental disorder characterized by periods of Depression (mood), depression and periods of abnormally elevated Mood (psychology), mood that last from days to weeks each. If the elevat ...
and
Sudden infant death syndrome Sudden infant death syndrome (SIDS) is the sudden unexplained death of a child of less than one year of age. Diagnosis requires that the death remain unexplained even after a thorough autopsy and detailed death scene investigation. SIDS usuall ...
(SIDS). According to this theory, the accumulation of perinatal and prenatal stressors has neurotoxic effects with consequences to one's health. In the field of genetics, Elhaik was part of the team that designed the GenoChip microarray for the
Genographic Project The Genographic Project, launched on 13 April 2005 by the National Geographic Society and IBM, was a genetic anthropological study (sales discontinued on 31 May 2019) that aimed to map historical human migrations patterns by collecting and ...
and their online tests. He also contributed to the development of algorithms for
data compression In information theory, data compression, source coding, or bit-rate reduction is the process of encoding information using fewer bits than the original representation. Any particular compression is either lossy or lossless. Lossless compressio ...
. in earlier ancestry studies, modern paternal or maternal haplogroups were used to trace migrations in antiquity. Elhaik was diffident about the method, considereding it problematic 'since the modern frequencies of haplogroups do not represent the past very accurately.' To this end he developed his aGPS algorithm to establish place of origin with greater precision. In the field of population genetics, Elhaik has published papers analyzing the ancestries of European Jews and Druze, including work related to the
Khazar hypothesis of Ashkenazi ancestry The Khazar hypothesis of Ashkenazi ancestry, often called the Khazar myth by its critics, is a largely abandoned historical hypothesis. The hypothesis postulated that Ashkenazi Jews were primarily, or to a large extent, descended from Khazars, a ...
, a contentious subject that has received media attention. Elhaik argues for a non-
Levant The Levant () is an approximate historical geographical term referring to a large area in the Eastern Mediterranean region of Western Asia. In its narrowest sense, which is in use today in archaeology and other cultural contexts, it is ...
ine origin of the
Ashkenazi Ashkenazi Jews ( ; he, יְהוּדֵי אַשְׁכְּנַז, translit=Yehudei Ashkenaz, ; yi, אַשכּנזישע ייִדן, Ashkenazishe Yidn), also known as Ashkenazic Jews or ''Ashkenazim'',, Ashkenazi Hebrew pronunciation: , singu ...
and favours the hypothesis that they are of mixed Irano-Turko-Slavic and southern European descent. Most of Elhaik's population genetic research uses the GPS (Geographic Population Structure) algorithm designed by him and co-authors. Elhaik himself initially contacted Harry Ostrer, who, along with most other scientists in the field, proposes that the Jews are genetically related and relatively homogeneous, in order to obtain permission to access the data basis used by Ostrer and his colleagues to establish their result. Ostrer was willing to share his data provided that Elhaik submit a proposal showing that the project met several criteria, including that it be "non-defamatory nature toward the Jewish people", which Elhaik viewed as evidence of bias and which pediatrician Catherine DeAngelis called "peculiar". Elhaik has said that while his paper "has attracted the attention of anti-Zionists and 'anti-Semitic white supremacists'", his intention was not to disprove a connection to biblical Jews, but rather "to eliminate the racist underpinnings of anti-Semitism in Europe". In the field of paleogenetics, Elhaik has published papers that identified ancient ancestry informative markers (aAIMs), which can be used for the biolocalization of ancient individuals He has also developed an AI-based method called Temporal Population Structure (TPS) to date ancient individuals from their DNA without prior knowledge. In terms of pure theory, Elhaik has published a critique of the methodology of PCA that undergirds the whole structure of population genetics. Re-analyzing 12 PCA applications he found that the method lends itself to generating desired outcomes, and is characterized by cherrypicking and
circular reasoning Circular may refer to: * The shape of a circle * ''Circular'' (album), a 2006 album by Spanish singer Vega * Circular letter (disambiguation) ** Flyer (pamphlet), a form of advertisement * Circular reasoning, a type of logical fallacy * Circula ...
. The design flexibility of PCA enables anyone to buttress preconceived claims about
ethnogenesis Ethnogenesis (; ) is "the formation and development of an ethnic group". This can originate by group self-identification or by outside identification. The term ''ethnogenesis'' was originally a mid-19th century neologism that was later introd ...
. He illustrated the point by instancing the case of genetic studies of the origins of
Ashkenazi Jews Ashkenazi Jews ( ; he, יְהוּדֵי אַשְׁכְּנַז, translit=Yehudei Ashkenaz, ; yi, אַשכּנזישע ייִדן, Ashkenazishe Yidn), also known as Ashkenazic Jews or ''Ashkenazim'',, Ashkenazi Hebrew pronunciation: , singu ...
.


Reactions

The accuracy and reliability of Elhaik's population genetic theory of the Khazars met with strong criticism from a number of other geneticists, as well as from linguists who took exception to his use of Paul Wexler's theories of Yiddish. In particular the validity of the proxy population used in his first Khazar paper was criticized on methodological grounds. Marcus Feldman, director of Stanford’s Morrison Institute for Population and Resource Studies, has said that Elhaik is "just wrong", with regard to the Khazar hypothesis where, in Feldman's view, he "appears to be applying the statistics in a way that gives him different results from what everybody else has obtained from essentially similar data". Elhaik has continued to publish work in peer-reviewed journals supporting and developing his research on questions regarding the ancestry of Jewish populations. Elhaik's position is that that
principal component analysis Principal component analysis (PCA) is a popular technique for analyzing large datasets containing a high number of dimensions/features per observation, increasing the interpretability of data while preserving the maximum amount of information, and ...
, employed to identify population structures and their ancestry, has serious flaws that generate erroneous results. In a 2015 overview of the issue of attempts to derive an inclusive genetic profile of all Jews,
Raphael Falk Raphael Alexandrovich Falk (1856 – 1913) was a Russian chess master. He took 12th at Moscow 1899 (the 1st Russian Chess Championship, Mikhail Chigorin won), shared 1st with Goncharov in Moscow City Chess Championship This is a list of the win ...
, touching on Elhaik's contribution to the argument in 2013, wrote:
The findings support the hypothesis that posits that European Jews are Caucasus, European, and Middle Eastern ancestries, and portray the European Jewish genome as a mosaic of Caucasus, European, and Semitic ancestries, thereby consolidating previous contradictory reports of Jewish ancestry.
Falk then noted the follow-up paper by Behar challenging Elhaik's results argued that the southern Caucasus populations, sampled by Elhaik were related to countries further south. The problem, he concluded, was that 'the risk of circularity of the argument is exposed: Geneticist determine the genotypic details of socio-ethnologists' classifications, whereas socio-demographers rely on geneticists findings to bolster their classifications.'
Raphael Falk Raphael Alexandrovich Falk (1856 – 1913) was a Russian chess master. He took 12th at Moscow 1899 (the 1st Russian Chess Championship, Mikhail Chigorin won), shared 1st with Goncharov in Moscow City Chess Championship This is a list of the win ...
'
'Genetic markers cannot determine Jewish descent,'
Frontiers in Genetics Frontiers Media SA is a publisher of peer-reviewed, open access, scientific journals currently active in science, technology, and medicine. It was founded in 2007 by Kamila and Henry Markram, and has since expanded to other academic fields. Fron ...
, 2014; 5: 462, online 21 January 2015


References


External links

* {{DEFAULTSORT:Elhaik, Eran 1980 births Living people Israeli geneticists American bioinformaticians Academics of the University of Sheffield University of Houston alumni Israeli emigrants to the United States