Chloroflexales
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Chloroflexales
Chloroflexales is an order of bacteria in the class Chloroflexia. Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). * Suborder Roseiflexineae Gupta et al. 2013 ** Family Roseiflexaceae Gupta et al. 2013 Kouleotrichaceae" Mehrshad et al. 2018*** Genus "'' Kouleothrix''" Kohno et al. 2002 *** Genus '' Heliothrix'' Pierson et al. 1986 *** Genus ''Roseiflexus'' Hanada et al. 2002 * Suborder Chloroflexineae Gupta et al. 2013 ** Family Chloroflexaceae Gupta et al. 2013 *** Genus ''Candidatus'' Chloranaerofilum Thiel et al. 2016 *** Genus ''Chloroflexus'' Pierson & Castenholz 1974 ''Chlorocrinis''"">Chlorocrinis.html" ;"title="''Chlorocrinis">''Chlorocrinis''"** Family Oscillochloridaceae Gupta et al. 2013 *** Genus ''Candidatus'' Chloroploca Gorlenko et al. 2014 *** Genus ''Chloronema'' ♪ Dubinina & Gorlenko 1975 *** Genus ''Oscillochloris'' Gorlenko & ...
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Chloroflexia
The Chloroflexia are a class of bacteria in the phylum Chloroflexota, known as filamentous green non-sulfur bacteria. They use light for energy and are named for their green pigment, usually found in photosynthetic bodies called chlorosomes. Chloroflexia are typically filamentous, and can move about through bacterial gliding. They are facultatively aerobic, but do not produce oxygen in the process of producing energy from light, or phototrophy. Additionally, Chloroflexia have a different method of phototrophy ( photoheterotrophy) than true photosynthetic bacteria. Etymology The name "Chloroflexi" is a Neolatin plural of "Chloroflexus", which is the name of the first genus described. The noun is a combination of the Greek ''chloros'' (χλωρός) meaning "greenish-yellow" and the Latin ''flexus'' (of ''flecto'') meaning "bent" to mean "a green bending". The name is not due to chlorine, an element confirmed as such in 1810 by Sir Humphry Davy and named after its pale green c ...
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Chloroflexus
Chloroflexales is an order of bacteria in the class Chloroflexia. Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). * Suborder Roseiflexineae Gupta et al. 2013 ** Family Roseiflexaceae Gupta et al. 2013 Kouleotrichaceae" Mehrshad et al. 2018*** Genus "'' Kouleothrix''" Kohno et al. 2002 *** Genus '' Heliothrix'' Pierson et al. 1986 *** Genus ''Roseiflexus ''Roseiflexus'' is a genus of bacteria in the family ''Roseiflexaceae'' with one known species ('' Roseiflexus castenholzii''). References Further reading * * * * {{Taxonbar, from=Q21078681 Bacteria genera Monotypic bacteria generaChlorocrinis.html" ;"title="''Chlorocrinis">''Chlorocrinis''"** Family Oscillochloridaceae Gupta et al. 2013 *** Genus ''Candidatus'' Chloroploca Gorlenko et al. 2014 *** Genus ''Chloronema'' ♪ Dubinina & Gorlenko 1975 *** Genus ''Oscillochloris'' Gorlenko ...
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List Of Bacterial Orders
This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project. Phylogeny National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups. Cladogram was taken from GTDB release 07-RS207 (8th April 2022). Clade Terrabacteria Phylum Chloroflexota * Class ?"Bathosphaeria" Mehrshad ...
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Herpetosiphon
''Herpetosiphon'' is a genus of bacteria in the family '' Herpetosiphonaceae''. Phylogeny References {{Taxonbar, from=Q16965551 Phototrophic bacteria Bacteria genera Chloroflexota ...
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Herpetosiphonales
Herpetosiphonales is an order of bacteria in the class Chloroflexia. See also * List of bacterial orders This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16S ... References External links Phototrophic bacteria Chloroflexota {{bacteria-stub ...
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Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to breaking up paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, creating new names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as human adjustments to the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the '' Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. See also * PhyloCode * National Center for Biotechnology Infor ...
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The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryote ...
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