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Actinomyces
''Actinomyces'' is a genus of the Actinomycetia class of bacteria. They all are gram-positive. ''Actinomyces'' species are facultatively anaerobic and they grow best under anaerobic conditions. ''Actinomyces'' species may form endospores, and while individual bacteria are rod-shaped, ''Actinomyces'' colonies form fungus-like branched networks of hyphae. The aspect of these colonies initially led to the incorrect assumption that the organism was a fungus and to the name ''Actinomyces'', "ray fungus" (from Greek , ray or beam, and , fungus). ''Actinomyces'' species are ubiquitous, occurring in soil and in the microbiota of animals, including the human microbiota. They are known for the important role they play in soil ecology; they produce a number of enzymes that help degrade organic plant material, lignin, and chitin. Thus, their presence is important in the formation of compost. Certain species are commensal in the skin flora, oral flora, gut flora, and vaginal flora o ...
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Human Microbiota
This article lists some of the species recognized as belonging to the human microbiome. Whole-body distributed *''Acinetobacter calcoaceticus'' *''Burkholderia cepacia'' *''Pseudomonas pseudoalcaligenes'' *''Peptostreptococcus spp'' Natural cavities *''Fusobacterium necrophorum'' *''Eubacterium spp'' *'' Microbacterium spp'' Skin *''Acinetobacter spp'' *''Bacillus spp'' *''Candida albicans'' *''Candida parapsilosis'' *''Corynebacterium spp'' *''Corynebacterium parvum'' *''Cutibacterium acnes'' *''Demodex folliculorum'' *''Enterobacter cloacae'' *'' Epidermophyton floccosum'' *''Micrococcus spp'' *'' Micrococcus luteus'' *''Mycobacterium spp'' *''Neisseria spp'' *''Peptostreptococcus spp'' *'' Malassezia ovale'' *''Propionibacterium spp'' *''Pseudomonas aeruginosa'' *'' Sarcina spp'' *''Staphylococcus aureus'' *''Staphylococcus epidermidis'' *'' Staphylococcus haemolyticus'' *''Streptococcus viridans'' *''Trichophyton spp'' Hair follicles *''Staphylococcus aureus'' ...
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Actinomycetia
The Actinomycetia are a class of bacteria. Taxonomy The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). * Acidothermales Sen et al. 2014 * Actinomycetales Buchanan 1917 (Approved Lists 1980) * Actinopolysporales Goodfellow and Trujillo 2015 * Bifidobacteriales Stackebrandt et al. 1997 * Catenulisporales Donadio et al. 2015 * Cryptosporangiales Nouioui et al. 2018 * Frankiales Sen et al. 2014 * Geodermatophilales Sen et al. 2014 * Glycomycetales Labeda 2015 * Jatrophihabitantales Salam et al. 2020 * Jiangellales Tang et al. 2015 * Kineosporiales Kämpfer 2015 * Micrococcales Prévot 1940 (Approved Lists 1980) * Micromonosporales Genilloud 2015 * Mycobacteriales Janke 1924 (Approved Lists 1980) * Nakamurellales Sen et al. 2014 * Propionibacteriales (Rainey et al. 1997) Patrick and McDowell 2015 * Pseudonocardiales Labeda and Goodfellow 2015 * Sporichthyales Nou ...
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Gram-positive
In bacteriology, gram-positive bacteria are bacteria that give a positive result in the Gram stain test, which is traditionally used to quickly classify bacteria into two broad categories according to their type of cell wall. Gram-positive bacteria take up the crystal violet stain used in the test, and then appear to be purple-coloured when seen through an optical microscope. This is because the thick peptidoglycan layer in the bacterial cell wall retains the stain after it is washed away from the rest of the sample, in the decolorization stage of the test. Conversely, gram-negative bacteria cannot retain the violet stain after the decolorization step; alcohol used in this stage degrades the outer membrane of gram-negative cells, making the cell wall more porous and incapable of retaining the crystal violet stain. Their peptidoglycan layer is much thinner and sandwiched between an inner cell membrane and a bacterial outer membrane, causing them to take up the counterstain ( s ...
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Oral Flora
Oral microbiology is the study of the microorganisms (microbiota) of the oral cavity and their interactions between oral microorganisms or with the host. The environment present in the human mouth is suited to the growth of characteristic microorganisms found there. It provides a source of water and nutrients, as well as a moderate temperature. Resident microbes of the mouth adhere to the teeth and gums to resist mechanical flushing from the mouth to stomach where acid-sensitive microbes are destroyed by hydrochloric acid. Anaerobic bacteria in the oral cavity include: ''Actinomyces'', '' Arachnia'' ('' Propionibacterium propionicus''), ''Bacteroides'', ''Bifidobacterium'', '' Eubacterium'', ''Fusobacterium'', ''Lactobacillus'', '' Leptotrichia'', '' Peptococcus'', ''Peptostreptococcus'', ''Propionibacterium'', ''Selenomonas'', ''Treponema'', and '' Veillonella''. Genera of fungi that are frequently found in the mouth include '' Candida'', ''Cladosporium'', ''Aspergillus'', ''F ...
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Endospore
An endospore is a dormant, tough, and non-reproductive structure produced by some bacteria in the phylum Bacillota. The name "endospore" is suggestive of a spore or seed-like form (''endo'' means 'within'), but it is not a true spore (i.e., not an offspring). It is a stripped-down, dormant form to which the bacterium can reduce itself. Endospore formation is usually triggered by a lack of nutrients, and usually occurs in gram-positive bacteria. In endospore formation, the bacterium divides within its cell wall, and one side then engulfs the other. Endospores enable bacteria to lie dormant for extended periods, even centuries. There are many reports of spores remaining viable over 10,000 years, and revival of spores millions of years old has been claimed. There is one report of viable spores of '' Bacillus marismortui'' in salt crystals approximately 250 million years old. When the environment becomes more favorable, the endospore can reactivate itself into a vegetative state. ...
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Bacillus (shape)
A bacillus (), also called a bacilliform bacterium or often just a rod (when the context makes the sense clear), is a rod-shaped bacterium or archaeon. Bacilli are found in many different taxonomic groups of bacteria. However, the name ''Bacillus'', capitalized and italicized, refers to a specific genus of bacteria. The name Bacilli, capitalized but not italicized, can also refer to a less specific taxonomic group of bacteria that includes two orders, one of which contains the genus ''Bacillus''. When the word is formatted with lowercase and not italicized, 'bacillus', it will most likely be referring to shape and not to the genus at all. Bacilliform bacteria are also often simply called rods when the bacteriologic context is clear. Bacilli usually divide in the same plane and are solitary, but can combine to form diplobacilli, streptobacilli, and palisades. * Diplobacilli: Two bacilli arranged side by side with each other. * Streptobacilli: Bacilli arranged in chains. * Coccoba ...
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Vaginal Flora
Vaginal flora, vaginal microbiota or vaginal microbiome are the microorganisms that colonize the vagina. They were discovered by the German gynecologist Albert Döderlein in 1892 and are part of the overall human flora. The amount and type of bacteria present have significant implications for an individual's overall health. The primary colonizing bacteria of a healthy individual are of the genus '' Lactobacillus'', such as '' L. crispatus'', and the lactic acid they produce is thought to protect against infection by pathogenic species. Lactobacilli The primary colonizing bacteria of a healthy individual are of the genus '' Lactobacillus'' (90–95%), the most common being '' L. crispatus'', '' L. iners'', '' L. jensenii'', and '' L. gasseri''. Since the first description of lactobacilli by Döderlein, lactobacilli have been generally considered the gatekeepers of the vaginal ecosystem. Lactobacilli have been shown to inhibit in vitro growth of pathogenic microorganisms, e.g ...
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Skin Flora
Skin flora, also called skin microbiota, refers to microbiota ( communities of microorganisms) that reside on the skin, typically human skin. Many of them are bacteria of which there are around 1,000 species upon human skin from nineteen phyla.Pappas S. (2009)Your Body Is a Wonderland ... of Bacteria ScienceNOW Daily News Most are found in the superficial layers of the epidermis and the upper parts of hair follicles. Skin flora is usually non-pathogenic, and either commensal (are not harmful to their host) or mutualistic (offer a benefit). The benefits bacteria can offer include preventing transient pathogenic organisms from colonizing the skin surface, either by competing for nutrients, secreting chemicals against them, or stimulating the skin's immune system. However, resident microbes can cause skin diseases and enter the blood system, creating life-threatening diseases, particularly in immunosuppressed people. A major non-human skin flora is '' Batrachochytrium dendr ...
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Gut Flora
Gut microbiota, gut microbiome, or gut flora, are the microorganisms, including bacteria, archaea, fungi, and viruses that live in the digestive tracts of animals. The gastrointestinal metagenome is the aggregate of all the genomes of the gut microbiota. The gut is the main location of the human microbiome. The gut microbiota has broad impacts, including effects on colonization, resistance to pathogens, maintaining the intestinal epithelium, metabolizing dietary and pharmaceutical compounds, controlling immune function, and even behavior through the gut–brain axis. The microbial composition of the gut microbiota varies across regions of the digestive tract. The colon contains the highest microbial density recorded in any habitat on Earth, representing between 300 and 1000 different species. Bacteria are the largest and to date, best studied component and 99% of gut bacteria come from about 30 or 40 species. Up to 60% of the dry mass of feces is bacteria. Over 99% of the b ...
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Opportunistic Infection
An opportunistic infection is an infection caused by pathogens (bacteria, fungi, parasites or viruses) that take advantage of an opportunity not normally available. These opportunities can stem from a variety of sources, such as a weakened immune system (as can occur in acquired immunodeficiency syndrome or when being treated with immunosuppressive drugs, as in cancer treatment), an altered microbiome (such as a disruption in gut microbiota), or breached integumentary barriers (as in penetrating trauma). Many of these pathogens do not necessarily cause disease in a healthy host that has a non-compromised immune system, and can, in some cases, act as commensals until the balance of the immune system is disrupted. Opportunistic infections can also be attributed to pathogens which cause mild illness in healthy individuals but lead to more serious illness when given the opportunity to take advantage of an immunocompromised host. Types of opportunistic infections A wide vari ...
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Livestock
Livestock are the domesticated animals raised in an agricultural setting to provide labor and produce diversified products for consumption such as meat, eggs, milk, fur, leather, and wool. The term is sometimes used to refer solely to animals who are raised for consumption, and sometimes used to refer solely to farmed ruminants, such as cattle, sheep, goats and pigs. Horses are considered livestock in the United States. The USDA classifies pork, veal, beef, and lamb (mutton) as livestock, and all livestock as red meat. Poultry and fish are not included in the category. The breeding, maintenance, slaughter and general subjugation of livestock, called '' animal husbandry'', is a part of modern agriculture and has been practiced in many cultures since humanity's transition to farming from hunter-gatherer lifestyles. Animal husbandry practices have varied widely across cultures and time periods. It continues to play a major economic and cultural role in numerous communities. ...
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