Tetrapyrazinoporphyrazine
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Tetrapyrazinoporphyrazine (TPz or TPyzPz), also known as azaphthalocyanine (AzaPc), is a planar, aromatic, macrocyclic, organic compound that is viewed as an aza-analogue of
phthalocyanine Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity. It is composed of four isoindole units linked by a ring of nitrogen ato ...
(Pc). It was first discovered and reported in 1937 by R. P. Linstead, the scientist who was able to configure the structures of
porphyrazine Porphyrazines, or tetraazaporphyrins, are tetrapyrrole macrocycles similar to porphyrins and phthalocyanines. Pioneered by Sir R. Patrick Linstead as an extension of his work on phthalocyanines, porphyrazines differ from porphyrins in that they ...
s and
phthalocyanine Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity. It is composed of four isoindole units linked by a ring of nitrogen ato ...
s as well. The structure of TPz is similar to that of Pc with eight nitrogen atoms substituting the carbons at the α-positions.


Electronic and optical properties of TPz

Similar to its analogues, the central core of TPz can be present as a free base (2H), which yields a D2h symmetry molecule, or metalated, in general, with a first-row transition metal ion (M) to yield a molecule with D4h symmetry. TPz molecules possess characteristic UV-Vis absorption spectra, observed as Soret bands (also known as B-bands) and Q-bands, similar to their analogous macrocycles. These bands result from the extended aromatic π-conjugation, allowing TPz molecules to absorb in the visible region. In the range of 620-720 nm, an intense and narrow Q-band is observed, whereas a less intense and broader B-band is observed at around 350 nm, both of which are attributed to be resulting from π-π* transitions. For metalated cores that are generally more symmetrical with D4h symmetry, only one band is observed in the Q-band region of UV-Vis, whereas the less symmetrical D2h non-metalated cores show two peaks in that region. The location of wavelength maxima in these spectra greatly depends on the electron-donating or withdrawing nature of the peripheral substituents, which can shift the peak positions bathochromically or hypsochromically depending on their electron-withdrawing or donating properties. TPz molecules possess both acidic and basic properties depending on the type of solvents they are dissolved in. Upon
protonation In chemistry, protonation (or hydronation) is the adding of a proton (or hydron, or hydrogen cation), usually denoted by H+, to an atom, molecule, or ion, forming a conjugate acid. (The complementary process, when a proton is removed from a Brø ...
in acidic conditions, both azomethine nitrogen atoms within the
porphyrazine Porphyrazines, or tetraazaporphyrins, are tetrapyrrole macrocycles similar to porphyrins and phthalocyanines. Pioneered by Sir R. Patrick Linstead as an extension of his work on phthalocyanines, porphyrazines differ from porphyrins in that they ...
core as well as the
pyrazine Pyrazine is a heterocyclic aromatic organic compound with the chemical formula C4H4N2. It is a symmetrical molecule with point group D2h. Pyrazine is less basic than pyridine, pyridazine and pyrimidine. It is a ''"deliquescent crystal or wax-lik ...
nitrogen atoms at the α-positions of TPz can get protonated. In basic conditions, however, central
pyrrole Pyrrole is a heterocyclic, aromatic, organic compound, a five-membered ring with the formula . It is a colorless volatile liquid that darkens readily upon exposure to air. Substituted derivatives are also called pyrroles, e.g., ''N''-methylpyrrol ...
nitrogen atoms of non-metalated cores are
deprotonated Deprotonation (or dehydronation) is the removal (transfer) of a proton (or hydron, or hydrogen cation), (H+) from a Brønsted–Lowry acid in an acid–base reaction.Henry Jakubowski, Biochemistry Online Chapter 2A3, https://employees.csbsju.ed ...
into H2TPz•- or H2TPz2-, with the acidity of these protons depending heavily on the peripheral substituents attached to the TPz molecule.


Comparison of TPz to related compounds

Structurally, TPz is related to other well-known macrocycles formed of
tetrapyrrole Tetrapyrroles are a class of chemical compounds that contain four pyrrole or pyrrole-like rings. The pyrrole/pyrrole derivatives are linked by ( or units), in either a linear or a cyclic fashion. Pyrroles are a five-atom ring with four carbon ...
subunits, such as
porphyrin Porphyrins ( ) are heterocyclic, macrocyclic, organic compounds, composed of four modified pyrrole subunits interconnected at their α carbon atoms via methine bridges (). In vertebrates, an essential member of the porphyrin group is heme, w ...
,
porphyrazine Porphyrazines, or tetraazaporphyrins, are tetrapyrrole macrocycles similar to porphyrins and phthalocyanines. Pioneered by Sir R. Patrick Linstead as an extension of his work on phthalocyanines, porphyrazines differ from porphyrins in that they ...
, and
phthalocyanine Phthalocyanine () is a large, aromatic, macrocyclic, organic compound with the formula and is of theoretical or specialized interest in chemical dyes and photoelectricity. It is composed of four isoindole units linked by a ring of nitrogen ato ...
. Due to the negative
inductive effect In Organic chemistry, the inductive effect in a molecule is a local change in the electron density due to electron-withdrawing or electron-donating groups elsewhere in the molecule, resulting in a permanent dipole in a bond. It is present in a ...
of the eight extra electron-withdrawing nitrogen atoms in the TPz structure, TPz molecules show greater
electron deficiency In chemistry, electron deficiency (and electron-deficient) is jargon that is used in two contexts: chemical species that violate the octet rule because they have too few valence electrons and species that happen to follow the octet rule but have el ...
than Pc analogous structures. Additionally, TPz molecules generally manifest increased intramolecular charge transport, lower
reduction potential Redox potential (also known as oxidation / reduction potential, ''ORP'', ''pe'', ''E_'', or E_) is a measure of the tendency of a chemical species to acquire electrons from or lose electrons to an electrode and thereby be reduced or oxidised respe ...
s, enhanced conductivity, but less effective π-conjugated systems. Free-base TPz molecules possess similar optical, magnetic, and structural properties to these analogues when each is reduced to its anionic states: radical anion (H2TPz•-) or dianion (H2TPz2-), yet with higher stability, allowing more air-stable functional compounds based on anionic TPz. This enhanced stability results from the more positive
reduction potential Redox potential (also known as oxidation / reduction potential, ''ORP'', ''pe'', ''E_'', or E_) is a measure of the tendency of a chemical species to acquire electrons from or lose electrons to an electrode and thereby be reduced or oxidised respe ...
s of TPz derivatives upon their aza-substitution compared to the
reduction potential Redox potential (also known as oxidation / reduction potential, ''ORP'', ''pe'', ''E_'', or E_) is a measure of the tendency of a chemical species to acquire electrons from or lose electrons to an electrode and thereby be reduced or oxidised respe ...
s of their Pc-based analogs. Upon increasing the number of aza-substitutions of the Pc macrocycle, the highest occupied molecular orbital – lowest unoccupied molecular orbital ( HOMO-LUMO) gap as well as the excitation energies increase, as shown through both
cyclic voltammetry In electrochemistry, cyclic voltammetry (CV) is a type of voltammetric measurement where the potential of the working electrode is ramped linearly versus time. Unlike in linear sweep voltammetry, after the set potential is reached in a CV expe ...
(CV) experimental studies and
density functional theory Density functional theory (DFT) is a computational quantum mechanical modelling method used in physics, chemistry and materials science to investigate the electronic structure (or nuclear structure) (principally the ground state) of many-body ...
(DFT) theoretical calculations. This increase is also confirmed through a shift to higher energy of the Q-band maximum wavelength position of  upon isosteric aza-substitution. In addition, TPz derivatives often show possess strong
fluorescence Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with colore ...
band in the visible region, permitting their use as red
fluorophore A fluorophore (or fluorochrome, similarly to a chromophore) is a fluorescent chemical compound that can re-emit light upon light excitation. Fluorophores typically contain several combined aromatic groups, or planar or cyclic molecules with se ...
s, unlike most Pc derivatives whose
fluorescence Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with colore ...
bands appear in the near-infrared region and are thus not within the visible region. Other similar characteristics between these analogues include poor solubility of the unsubstituted core in various solvents, which limits their utilization in different applications. Thus, researchers have resorted into adding substituents that can provide both: enhanced solubility and additional functionalization sites. Some studies have reported the synthesis of Pc and TPz derivatives that are even water-soluble, like the example in which
click chemistry Click chemistry is an approach to chemical synthesis that emphasizes efficiency, simplicity, selectivity, and modularity in chemical processes used to join molecular building blocks. It includes both the development and use of "click reactions", a ...
was utilized to add
polyethylene glycol Polyethylene glycol (PEG; ) is a polyether compound derived from petroleum with many applications, from industrial manufacturing to medicine. PEG is also known as polyethylene oxide (PEO) or polyoxyethylene (POE), depending on its molecular wei ...
(PEG) functionalities as periphery substituents, rendering them soluble in aqueous media as well as organic solvents.


Synthesis

TPzs are usually synthesized upon the cyclotetramerization of pyrazine-2,3-dicarbonitriles, which itself can be synthesized either from the condensation of
diaminomaleonitrile Diaminomaleonitrile (DAMN) is an organic compound composed of two amino groups and two nitrile groups bonded to a central alkene unit. The systematic name reflects its relationship to maleic acid. DAMN forms by oligomerization of hydrogen cyanide. ...
(DAMN) and substituted α-diketone derivatives or from the substitution of chloro pyrazine-2,3-dicarbonitriles. To achieve TPz synthesis, pyrazine-2,3-dicarbonitriles can be reacted either through alkoxide-initiation using lithium butoxide or through templated cyclization pathways by adding a metal ion template. Greatly electron-deficient macrocycle formation reactions, as is the case of TPz, require the use of templated method by utilizing a cyclotetramerization agent to avoid the risk of alkoxide initiator exchanging the positions of peripheral substituents. Often, a mild cyclotetramerization agent is utilized to accompany the metal ion template, such as magnesium butoxide, to attain the MgTPz macrocycle. The magnesium-templated cyclotetramerization reaction can be followed by a central metal removal to attain non-metalated core or a metal center exchange reaction to replace the central metal with a transition metal. This option is particularly advantageous since Mg2+ ions are easily demetalated form the central TPz core in acidic conditions. 1H-NMR (
Nuclear Magnetic Resonance Nuclear magnetic resonance (NMR) is a physical phenomenon in which nuclei in a strong constant magnetic field are disturbed by a weak oscillating magnetic field (in the near field) and respond by producing an electromagnetic signal with a ...
) spectroscopy can be utilized to characterize TPz molecules and their derivatives. Yet, it is critical to find a suitable solvent in which the TPz derivative is soluble. 1H-NMR peaks arising from TPz derivatives can appear for i) peripheral substituents attached to the -positions of TPz, or ii) from central core protons for the non-metalated counterparts which appear at around -0.5 to -1.3 ppm (lower field shifted compared to those of metal-free Pc derivatives that appear at around -3 to -5 ppm).


Potential Applications

TPz molecules have been utilized in a variety of applications, including
photodynamic therapy Photodynamic therapy (PDT) is a form of phototherapy involving light and a photosensitizing chemical substance used in conjunction with molecular oxygen to elicit cell death ( phototoxicity). PDT is used in treating acne, wet age-related macula ...
, pH sensing, fluorescence quenching, and electrocatalysis, owing to their unique optical and electronic properties.


Photodynamic therapy Photodynamic therapy (PDT) is a form of phototherapy involving light and a photosensitizing chemical substance used in conjunction with molecular oxygen to elicit cell death ( phototoxicity). PDT is used in treating acne, wet age-related macula ...
(PDT)

Similar to its
porphyrin Porphyrins ( ) are heterocyclic, macrocyclic, organic compounds, composed of four modified pyrrole subunits interconnected at their α carbon atoms via methine bridges (). In vertebrates, an essential member of the porphyrin group is heme, w ...
analogues, TPz molecules have potential as drugs for PDT cancer treatments. For example, researchers reported a TPz derivative as a promising PDT/BNCT (
boron neutron capture therapy Neutron capture therapy (NCT) is a type of radiotherapy for treating locally invasive malignant tumors such as primary brain tumors, recurrent cancers of the head and neck region, and cutaneous and extracutaneous melanomas. It is a two-step pro ...
) candidate, in which TPz molecule with pyridyl substituents, where the nitrogen atoms of the latter were coordinated to a palladium carboran-1-thiolate complex. Another study reported the incorporation of bulky triazole-phenoxy substituents with a specific orientation, which was key for the enhanced photodynamic activity of the molecules. Other efforts have focused on providing water-soluble molecules or incorporating different metal centers within the TPz for developing enhanced
photosensitizer Photosensitizers are light absorbers that alter the course of a photochemical reaction. They usually are catalysts. They can function by many mechanisms; sometimes they abstract an electron from the substrate, and sometimes they abstract a hydro ...
(PS). For example, anionic
carboxylate In organic chemistry, a carboxylate is the conjugate base of a carboxylic acid, (or ). It is an anion, an ion with negative charge. Carboxylate salts are salts that have the general formula , where M is a metal and ''n'' is 1, 2,... ...
peripheral substituents on TPz inhibited their aggregation in aqueous media and showed promising photodynamic activity through ''
in vitro ''In vitro'' (meaning ''in glass'', or ''in the glass'') Research, studies are performed with Cell (biology), cells or biological molecules outside their normal biological context. Colloquially called "test-tube experiments", these studies in ...
'' studies. In addition, a silicon-centered TPz derivative was encapsulated into a spherically shaped shell formed of carbohydrate-based block co-polymeric
micelle A micelle () or micella () ( or micellae, respectively) is an aggregate (or supramolecular assembly) of surfactant amphipathic lipid molecules dispersed in a liquid, forming a colloidal suspension (also known as associated colloidal system). ...
s, and the composite was shown to provide promising PDT applications with excellent photostability and selectivity towards cancerous cells.


Electrocatalysis

The efficiency of
oxygen reduction reaction In chemistry, the oxygen reduction reaction refers to the reduction half reaction whereby O2 is reduced to water or hydrogen peroxide. In fuel cells, the reduction to water is preferred because the current is higher. The oxygen reduction reactio ...
(ORR) electrocatalysis by TPz derivatives is highly dependent on the type of central metal as well as the peripheral substituents attached to its β-positions. A study showed that unsubstituted Cu or Co-TPz showed enhanced ORR catalysis performance, particularly activity, durability, and product selectivity, compared to substituted derivatives. Another study has integrated cobalt-metalated aza-substituted Pc analogues, namely CoPc, cobalt tetrapyridinoporphyrazine (CoTPP), and CoTPz, onto
carbon nanotube A carbon nanotube (CNT) is a tube made of carbon with a diameter in the nanometre range ( nanoscale). They are one of the allotropes of carbon. Two broad classes of carbon nanotubes are recognized: * ''Single-walled carbon nanotubes'' (''S ...
s (CNTs) and studied the effect of this substitution on the ORR electrocatalysis. Results showed that CoTPP and CoTPz provide enhanced ORR activity in comparison to CoPc, attributed to the one-step four-electron ORR process for the former analogues versus the two-step two-electron pathway for the latter.


Sensing

By adding substituents, composed of various functional groups, to the β-positions of TPz, specific host–guest interactions can be targeted to cause fluorescence amplification or quenching upon the interaction of TPz (host) with metal ions (guest), which allows for sensing the presence of these ions. For instance, zinc-centered TPz molecules with
aza-crown ether In organic chemistry, an aza-crown ether is an aza analogue of a crown ether (cyclic polyether). That is, it has a nitrogen atom (amine linkage, or ) in place of each oxygen atom (ether linkage, ) around the ring. While the parent crown ethers ...
substituents were synthesized and were able to selectively sense the presence of
potassium thiocyanate Potassium thiocyanate is the chemical compound with the molecular formula KSCN. It is an important salt of the thiocyanate anion, one of the pseudohalides. The compound has a low melting point relative to most other inorganic salts. Uses Ch ...
(KSCN) through the size-fit recognition of the K+ cation and the coordination of SCN to the zinc cation in lab-controlled solvent systems as well as in ''
in vitro ''In vitro'' (meaning ''in glass'', or ''in the glass'') Research, studies are performed with Cell (biology), cells or biological molecules outside their normal biological context. Colloquially called "test-tube experiments", these studies in ...
'' biological systems. Alternatively, another study demonstrated the synthesis of a fluorescence quenching asymmetric dipyridyl-containing TPz sensor in the presence Cu2+ ions. In addition, due to the basic and acidic nature of TPz, its derivatives show promising applications in pH sensing, depending on the peripheral substituents attached to the core. Particularly, attaching nitrogen donor (N-donor) sites can allow sensing of basic media, while including donor phenolate (O-donor) sites provides molecules that are able to sense acidic media. In addition to the latter, free-base TPz can cause an increase in fluorescence upon the deprotonation of its central nitrogen atoms in basic media. By comparing the different observations of previously reported structure-property relationships, a researcher can withdraw generalizable features of structural effects on fluorescence. Thus, by choosing different substituent features that might cause changes in fluorescence, by selecting to synthesize a metal-free of metal-centered TPz, and/or by altering the peripheral functional groups, it is possible to design a TPz molecule that can utilize these features to allow a synergistic effect observed as increase or decrease in fluorescence intensity of the molecule at different pH values.


Dark quenchers

TPz molecules have also been reported as efficient dark quenchers. TPz molecules have been proven to be efficient as labels for
oligonucleotide Oligonucleotides are short DNA or RNA molecules, oligomers, that have a wide range of applications in genetic testing, Recombinant DNA, research, and Forensic DNA, forensics. Commonly made in the laboratory by Oligonucleotide synthesis, solid-phase ...
s, which were able to quench the fluorescence of
fluorescein amidite Fluorescein amidites, abbreviated as FAM, are important synthetic equivalents of fluorescein dye used in oligonucleotide synthesis and molecular biology. FAM is used in the preparation of fluorescein-labeled oligonucleotide probes for the detect ...
(FAM) and invitrogen cyanine5 (Cy5) dyes in
DNA hybridization In molecular biology, hybridization (or hybridisation) is a phenomenon in which single-stranded deoxyribonucleic acid (DNA) or ribonucleic acid (RNA) molecules anneal to complementary DNA or RNA. Though a double-stranded DNA sequence is generally ...
probes. Another unsymmetric TPz molecule but modified with oligodeoxyribonucletoides was developed as a dark quencher to these two dyes among others.


Liquid crystal Liquid crystal (LC) is a state of matter whose properties are between those of conventional liquids and those of solid crystals. For example, a liquid crystal can flow like a liquid, but its molecules may be oriented in a common direction as i ...
s

TPz molecules have the potential of showing liquid crystalline
mesophase In chemistry and chemical physics, a mesophase or mesomorphic phase is a phase of matter intermediate between solid and liquid. Gelatin is a common example of a partially ordered structure in a mesophase. Further, biological structures such as the ...
through different aspects. First, helical liquid-crystalline phases or induced
chiral Chirality () is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek language, Greek (''kheir''), "hand", a familiar chiral object. An object or a system is ''chiral'' if it is dist ...
nematic phases can be generated by introducing
chiral Chirality () is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek language, Greek (''kheir''), "hand", a familiar chiral object. An object or a system is ''chiral'' if it is dist ...
macroheterocyclic
dopant A dopant (also called a doping agent) is a small amount of a substance added to a material to alter its physical properties, such as electrical or optics, optical properties. The amount of dopant is typically very low compared to the material b ...
s, such as TPz, into an orientationally ordered matrix. Consequently, the efficiency of phase transitions is determined to be related to the molecular structure and volume,
optical activity Optical rotation, also known as polarization rotation or circular birefringence, is the rotation of the orientation of the plane of polarization about the optical axis of linearly polarized light as it travels through certain materials. Circul ...
, and acoplanarity of the
dopant A dopant (also called a doping agent) is a small amount of a substance added to a material to alter its physical properties, such as electrical or optics, optical properties. The amount of dopant is typically very low compared to the material b ...
. Second, by adding long aliphatic chains to the peripheries of rigid aromatic TPz molecules, there is a potential of their utilization as
discotic liquid crystal Discotic liquid crystals are mesophases formed from disc-shaped molecules known as "discotic mesogens". These phases are often also referred to as columnar phases. Discotic mesogens are typically composed of an aromatic core surrounded by flexible ...
s. Researchers have utilized both metalated and non-metalated TPz cores with lengthy peripheral alkyl chains either by attaching them directly to the TPz core, or by extending the core aromaticity through fused aromatic rings and attaching the alkyl chains to the extended structure.


Integration into polymeric structures or hybrid composites

Since 2022, interests have been emerging into incorporating TPz structures into extended polymeric structures for functional applications. In 2022, a study reported the cyclotetramerization of a tetracarbonitrile-functionalized pyrazino pyrene molecule into a highly crystalline fused aromatic network (FAN) encompassing TPz units. It was utilized as a solid electrolyte in a
proton-exchange membrane fuel cell Proton-exchange membrane fuel cells (PEMFC), also known as polymer electrolyte membrane (PEM) fuel cells, are a type of fuel cell being developed mainly for transport applications, as well as for stationary fuel-cell applications and portable f ...
owing to its high proton conduction. In a later study, researchers developed a three dimensional (3D) FAN based on the introduction of bulky substituents on TPz, bending its aromatic structure to become saddle-like. The synthesis of these 3D FANs was attained by the metal-templated cyclotetramerization of alkyl substituted .


References

{{Reflist Aromatic compounds Heterocyclic compounds with 7 or more rings Pyrazines