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In
probability theory Probability theory or probability calculus is the branch of mathematics concerned with probability. Although there are several different probability interpretations, probability theory treats the concept in a rigorous mathematical manner by expre ...
, the rectified Gaussian distribution is a modification of the
Gaussian distribution In probability theory and statistics, a normal distribution or Gaussian distribution is a type of continuous probability distribution for a real number, real-valued random variable. The general form of its probability density function is f(x ...
when its negative elements are reset to 0 (analogous to an electronic
rectifier A rectifier is an electrical device that converts alternating current (AC), which periodically reverses direction, to direct current (DC), which flows in only one direction. The process is known as ''rectification'', since it "straightens" t ...
). It is essentially a mixture of a discrete distribution (constant 0) and a
continuous distribution In probability theory and statistics, a probability distribution is a function that gives the probabilities of occurrence of possible events for an experiment. It is a mathematical description of a random phenomenon in terms of its sample spac ...
(a truncated Gaussian distribution with interval (0,\infty)) as a result of censoring.


Density function

The
probability density function In probability theory, a probability density function (PDF), density function, or density of an absolutely continuous random variable, is a Function (mathematics), function whose value at any given sample (or point) in the sample space (the s ...
of a rectified Gaussian distribution, for which
random variable A random variable (also called random quantity, aleatory variable, or stochastic variable) is a Mathematics, mathematical formalization of a quantity or object which depends on randomness, random events. The term 'random variable' in its mathema ...
s ''X'' having this distribution, derived from the normal distribution \mathcal(\mu,\sigma^2), are displayed as X \sim \mathcal^(\mu,\sigma^2) , is given by f(x;\mu,\sigma^2) =\Phi\delta(x)+ \frac\; e^\textrm(x). Here, \Phi(x) is the
cumulative distribution function In probability theory and statistics, the cumulative distribution function (CDF) of a real-valued random variable X, or just distribution function of X, evaluated at x, is the probability that X will take a value less than or equal to x. Ever ...
(cdf) of the
standard normal distribution In probability theory and statistics, a normal distribution or Gaussian distribution is a type of continuous probability distribution for a real-valued random variable. The general form of its probability density function is f(x) = \frac e^ ...
: \Phi(x) = \frac \int_^x e^ \, dt \quad x\in\mathbb, \delta(x) is the
Dirac delta function In mathematical analysis, the Dirac delta function (or distribution), also known as the unit impulse, is a generalized function on the real numbers, whose value is zero everywhere except at zero, and whose integral over the entire real line ...
\delta(x) = \begin +\infty, & x = 0 \\ 0, & x \ne 0 \end and, \textrm(x) is the unit step function: \textrm(x) = \begin 0, & x \leq 0, \\ 1, & x > 0. \end


Mean and variance

Since the unrectified normal distribution has
mean A mean is a quantity representing the "center" of a collection of numbers and is intermediate to the extreme values of the set of numbers. There are several kinds of means (or "measures of central tendency") in mathematics, especially in statist ...
\mu and since in transforming it to the rectified distribution some probability mass has been shifted to a higher value (from negative values to 0), the mean of the rectified distribution is greater than \mu. Since the rectified distribution is formed by moving some of the probability mass toward the rest of the probability mass, the rectification is a mean-preserving contraction combined with a mean-changing rigid shift of the distribution, and thus the
variance In probability theory and statistics, variance is the expected value of the squared deviation from the mean of a random variable. The standard deviation (SD) is obtained as the square root of the variance. Variance is a measure of dispersion ...
is decreased; therefore the variance of the rectified distribution is less than \sigma^2.


Generating values

To generate values computationally, one can use : s\sim\mathcal(\mu,\sigma^2), \quad x=\textrm(0,s), and then : x\sim\mathcal^(\mu,\sigma^2).


Application

A rectified Gaussian distribution is semi-conjugate to the Gaussian likelihood, and it has been recently applied to
factor analysis Factor analysis is a statistical method used to describe variability among observed, correlated variables in terms of a potentially lower number of unobserved variables called factors. For example, it is possible that variations in six observe ...
, or particularly, (non-negative) rectified factor analysis. Harva proposed a variational learning algorithm for the rectified factor model, where the factors follow a mixture of rectified Gaussian; and later Meng proposed an infinite rectified factor model coupled with its Gibbs sampling solution, where the factors follow a Dirichlet process mixture of rectified Gaussian distribution, and applied it in
computational biology Computational biology refers to the use of techniques in computer science, data analysis, mathematical modeling and Computer simulation, computational simulations to understand biological systems and relationships. An intersection of computer sci ...
for reconstruction of
gene regulatory network A gene (or genetic) regulatory network (GRN) is a collection of molecular regulators that interact with each other and with other substances in the cell to govern the gene expression levels of mRNA and proteins which, in turn, determine the fu ...
s.


Extension to general bounds

An extension to the rectified Gaussian distribution was proposed by Palmer et al., allowing rectification between arbitrary lower and upper bounds. For lower and upper bounds a and b respectively, the cdf, F_(x, \mu,\sigma^2) is given by: : F_(x, \mu,\sigma^2) = \begin 0, & x < a,\\ \Phi(x, \mu,\sigma^2), & a \le x < b, \\ 1, & x \ge b,\\ \end where \Phi(x, \mu,\sigma^2) is the cdf of a normal distribution with mean \mu and variance \sigma^2. The mean and variance of the rectified distribution is calculated by first transforming the constraints to be acting on a standard normal distribution: :c = \frac, \qquad d = \frac. Using the transformed constraints, the mean and variance, \mu_ and \sigma^2_ respectively, are then given by: : \mu_ = \frac \left(e^\left( -\frac\right) - e^\left( -\frac\right)\right) + \frac\left(1 + \textrm\left( \frac\right) \right) + \frac\left(1 - \textrm\left( \frac\right) \right), : \begin \sigma_^ & = \frac\left(\textrm\left(\frac\right) - \textrm\left(\frac\right) \right) - \frac\left(\left(d-2\mu_\right) e^\left(-\frac\right) - \left(c-2\mu_\right)e^\left(-\frac\right)\right) \\ &+ \frac\left(1 + \textrm\left(\frac\right)\right) + \frac\left(1 - \textrm\left(\frac\right)\right), \end : \mu_ = \mu + \sigma\mu_, : \sigma^2_ = \sigma^2\sigma_^2, where is the
error function In mathematics, the error function (also called the Gauss error function), often denoted by , is a function \mathrm: \mathbb \to \mathbb defined as: \operatorname z = \frac\int_0^z e^\,\mathrm dt. The integral here is a complex Contour integrat ...
. This distribution was used by Palmer et al. for modelling physical resource levels, such as the quantity of liquid in a vessel, which is bounded by both 0 and the capacity of the vessel.


See also

* Folded normal distribution *
Half-normal distribution In probability theory and statistics, the half-normal distribution is a special case of the folded normal distribution. Let X follow an ordinary normal distribution, N(0,\sigma^2). Then, Y=, X, follows a half-normal distribution. Thus, the ha ...
* Half-''t'' distribution * Modified half-normal distribution *
Truncated normal distribution In probability and statistics, the truncated normal distribution is the probability distribution derived from that of a normally distributed random variable by bounding the random variable from either below or above (or both). The truncated no ...


References

{{ProbDistributions, mixed Probability distributions Normal distribution