Neuroimaging
Neuroimaging is the use of quantitative (computational) techniques to study the neuroanatomy, structure and function of the central nervous system, developed as an objective way of scientifically studying the healthy human brain in a non-invasive ...
software is used to study the structure and function of the brain. To see an
NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site.
*
3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.
*
Amira 3D visualization and analysis software
*
Analysis of Functional NeuroImages (AFNI)
*
Analyze developed by the
Biomedical Imaging Resource (BIR) at
Mayo Clinic
Mayo Clinic () is a Nonprofit organization, private American Academic health science centre, academic Medical centers in the United States, medical center focused on integrated health care, healthcare, Mayo Clinic College of Medicine and Science ...
.
*
Brain Image Analysis Package
*
CamBA
*
Caret
Caret () is the name used familiarly for the character provided on most QWERTY keyboards by typing . The symbol has a variety of uses in programming and mathematics. The name "caret" arose from its visual similarity to the original proofre ...
Van Essen Lab,
Washington University in St. Louis
*
CONN (functional connectivity toolbox) Diffusion Imaging in Python (DIPY)DL+DiReCT*
EEGLAB
*
FMRIB Software Library (FSL)
*
FreeSurfer
*
Computational anatomy toolbox
*
Imarisbr>
Imaris for Neuroscientists*
ISAS (Ictal-Interictal SPECT Analysis by SPM)
*
LONI Pipeline, Laboratory of Neuro Imaging, USC
*
Lead-DBS
*
Mango
A mango is an edible stone fruit produced by the tropical tree '' Mangifera indica''. It originated from the region between northwestern Myanmar, Bangladesh, and northeastern India. ''M. indica'' has been cultivated in South and Southeast As ...
*
NITRC The Neuroimaging Informatics Tools and Resources Clearinghouse. An
NIH funded database of neuroimaging tools
*
NeuroKit, a
Python open source
Open source is source code that is made freely available for possible modification and redistribution. Products include permission to use and view the source code, design documents, or content of the product. The open source model is a decentrali ...
toolbox for physiological signal processing
*
Neurophysiological Biomarker Toolbox
PyNets: A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning(PyNets)
*
Seed-based d mapping (previously signed differential mapping, SDM): a method for conducting meta-analyses of voxel-based neuroimaging studies.
* The
Spinal Cord Toolbox (SCT) is the first comprehensive and open-source software for processing MR images of the spinal cord.
[Cohen-Adad J, De Leener B, Benhamou M, Cadotte D, Fleet D, Cadotte A, Fehlings MG, Pelletier Paquette JP, Thong W, Taso M, Collins DL, Callot V, Fonov V. Spinal Cord Toolbox: an open-source framework for processing spinal cord MRI data. Proceedings of the 20th Annual Meeting of OHBM, Hamburg, Germany 2014:3633]
*
Statistical parametric mapping (SPM)
References
{{DEFAULTSORT:List Of Neuroimaging Software
*
Neuroimaging
Neuroimaging is the use of quantitative (computational) techniques to study the neuroanatomy, structure and function of the central nervous system, developed as an objective way of scientifically studying the healthy human brain in a non-invasive ...