Bayesian Programming
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Bayesian Programming
Bayesian programming is a formalism and a methodology for having a technique to specify probabilistic models and solve problems when less than the necessary information is available. Edwin T. Jaynes proposed that probability could be considered as an alternative and an extension of logic for rational reasoning with incomplete and uncertain information. In his founding book ''Probability Theory: The Logic of Science'' he developed this theory and proposed what he called “the robot,” which was not a physical device, but an inference engine to automate probabilistic reasoning—a kind of Prolog for probability instead of logic. Bayesian programming is a formal and concrete implementation of this "robot". Bayesian programming may also be seen as an algebraic formalism to specify graphical models such as, for instance, Bayesian networks, dynamic Bayesian networks, Kalman filters or hidden Markov models. Indeed, Bayesian Programming is more general than Bayesian networks and ha ...
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Probability Distribution
In probability theory and statistics, a probability distribution is the mathematical function that gives the probabilities of occurrence of different possible outcomes for an experiment. It is a mathematical description of a random phenomenon in terms of its sample space and the probabilities of events (subsets of the sample space). For instance, if is used to denote the outcome of a coin toss ("the experiment"), then the probability distribution of would take the value 0.5 (1 in 2 or 1/2) for , and 0.5 for (assuming that the coin is fair). Examples of random phenomena include the weather conditions at some future date, the height of a randomly selected person, the fraction of male students in a school, the results of a survey to be conducted, etc. Introduction A probability distribution is a mathematical description of the probabilities of events, subsets of the sample space. The sample space, often denoted by \Omega, is the set of all possible outcomes of a rando ...
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Conditional Independance
In probability theory, conditional independence describes situations wherein an observation is irrelevant or redundant when evaluating the certainty of a hypothesis. Conditional independence is usually formulated in terms of conditional probability, as a special case where the probability of the hypothesis given the uninformative observation is equal to the probability without. If A is the hypothesis, and B and C are observations, conditional independence can be stated as an equality: :P(A\mid B,C) = P(A \mid C) where P(A \mid B, C) is the probability of A given both B and C. Since the probability of A given C is the same as the probability of A given both B and C, this equality expresses that B contributes nothing to the certainty of A. In this case, A and B are said to be conditionally independent given C, written symbolically as: (A \perp\!\!\!\perp B \mid C). The concept of conditional independence is essential to graph-based theories of statistical inference, as it establ ...
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Extended Kalman Filter
In estimation theory, the extended Kalman filter (EKF) is the nonlinear version of the Kalman filter which linearizes about an estimate of the current mean and covariance. In the case of well defined transition models, the EKF has been considered the ''de facto'' standard in the theory of nonlinear state estimation, navigation systems and GPS. History The papers establishing the mathematical foundations of Kalman type filters were published between 1959 and 1961. The Kalman filter is the optimal linear estimator for ''linear'' system models with additive independent white noise in both the transition and the measurement systems. Unfortunately, in engineering, most systems are ''nonlinear'', so attempts were made to apply this filtering method to nonlinear systems; most of this work was done at NASA Ames. The EKF adapted techniques from calculus, namely multivariate Taylor series expansions, to linearize a model about a working point. If the system model (as described below) is ...
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Hidden Markov Model
A hidden Markov model (HMM) is a statistical Markov model in which the system being modeled is assumed to be a Markov process — call it X — with unobservable ("''hidden''") states. As part of the definition, HMM requires that there be an observable process Y whose outcomes are "influenced" by the outcomes of X in a known way. Since X cannot be observed directly, the goal is to learn about X by observing Y. HMM has an additional requirement that the outcome of Y at time t=t_0 must be "influenced" exclusively by the outcome of X at t=t_0 and that the outcomes of X and Y at t handwriting recognition, handwriting, gesture recognition, part-of-speech tagging, musical score following, partial discharges and bioinformatics. Definition Let X_n and Y_n be discrete-time stochastic processes and n\geq 1. The pair (X_n,Y_n) is a ''hidden Markov model'' if * X_n is a Markov process whose behavior is not directly observable ("hidden"); * \operatorname\bigl(Y_n ...
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Recursive Bayesian Estimation
In probability theory, statistics, and machine learning, recursive Bayesian estimation, also known as a Bayes filter, is a general probabilistic approach for estimating an unknown probability density function (PDF) recursively over time using incoming measurements and a mathematical process model. The process relies heavily upon mathematical concepts and models that are theorized within a study of prior and posterior probabilities known as Bayesian statistics. In robotics A Bayes filter is an algorithm used in computer science for calculating the probabilities of multiple beliefs to allow a robot to infer its position and orientation. Essentially, Bayes filters allow robots to continuously update their most likely position within a coordinate system, based on the most recently acquired sensor data. This is a recursive algorithm. It consists of two parts: prediction and innovation. If the variables are normally distributed and the transitions are linear, the Bayes filter becomes ...
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Normalizing Constant
The concept of a normalizing constant arises in probability theory and a variety of other areas of mathematics. The normalizing constant is used to reduce any probability function to a probability density function with total probability of one. Definition In probability theory, a normalizing constant is a constant by which an everywhere non-negative function must be multiplied so the area under its graph is 1, e.g., to make it a probability density function or a probability mass function. Examples If we start from the simple Gaussian function p(x)=e^, \quad x\in(-\infty,\infty) we have the corresponding Gaussian integral \int_^\infty p(x) \, dx = \int_^\infty e^ \, dx = \sqrt, Now if we use the latter's reciprocal value as a normalizing constant for the former, defining a function \varphi(x) as \varphi(x) = \frac p(x) = \frac e^ so that its integral is unit \int_^\infty \varphi(x) \, dx = \int_^\infty \frac e^ \, dx = 1 then the function \varphi(x) is a probability d ...
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PPM Compression Algorithm
Prediction by partial matching (PPM) is an adaptive statistical data compression technique based on context modeling and prediction. PPM models use a set of previous symbols in the uncompressed symbol stream to predict the next symbol in the stream. PPM algorithms can also be used to cluster data into predicted groupings in cluster analysis. Theory Predictions are usually reduced to symbol rankings. Each symbol (a letter, bit or any other amount of data) is ranked before it is compressed, and the ranking system determines the corresponding codeword (and therefore the compression rate). In many compression algorithms, the ranking is equivalent to probability mass function estimation. Given the previous letters (or given a context), each symbol is assigned with a probability. For instance, in arithmetic coding the symbols are ranked by their probabilities to appear after previous symbols, and the whole sequence is compressed into a single fraction that is computed according to ...
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N-gram
In the fields of computational linguistics and probability, an ''n''-gram (sometimes also called Q-gram) is a contiguous sequence of ''n'' items from a given sample of text or speech. The items can be phonemes, syllables, letters, words or base pairs according to the application. The ''n''-grams typically are collected from a text or speech corpus. When the items are words, -grams may also be called ''shingles''. Using Latin numerical prefixes, an ''n''-gram of size 1 is referred to as a "unigram"; size 2 is a " bigram" (or, less commonly, a "digram"); size 3 is a "trigram". English cardinal numbers are sometimes used, e.g., "four-gram", "five-gram", and so on. In computational biology, a polymer or oligomer of a known size is called a ''k''-mer instead of an ''n''-gram, with specific names using Greek numerical prefixes such as "monomer", "dimer", "trimer", "tetramer", "pentamer", etc., or English cardinal numbers, "one-mer", "two-mer", "three-mer", etc. Applicat ...
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Laplace Rule Of Succession
In probability theory, the rule of succession is a formula introduced in the 18th century by Pierre-Simon Laplace in the course of treating the sunrise problem. The formula is still used, particularly to estimate underlying probabilities when there are few observations or for events that have not been observed to occur at all in (finite) sample data. Statement of the rule of succession If we repeat an experiment that we know can result in a success or failure, ''n'' times independently, and get ''s'' successes, and ''n − s'' failures, then what is the probability that the next repetition will succeed? More abstractly: If ''X''1, ..., ''X''''n''+1 are conditionally independent random variables that each can assume the value 0 or 1, then, if we know nothing more about them, :P(X_=1 \mid X_1+\cdots+X_n=s)=. Interpretation Since we have the prior knowledge that we are looking at an experiment for which both success and failure are possible, our estimate is as if we had obs ...
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Naive Bayes Classifier
In statistics, naive Bayes classifiers are a family of simple " probabilistic classifiers" based on applying Bayes' theorem with strong (naive) independence assumptions between the features (see Bayes classifier). They are among the simplest Bayesian network models, but coupled with kernel density estimation, they can achieve high accuracy levels. Naive Bayes classifiers are highly scalable, requiring a number of parameters linear in the number of variables (features/predictors) in a learning problem. Maximum-likelihood training can be done by evaluating a closed-form expression, which takes linear time, rather than by expensive iterative approximation as used for many other types of classifiers. In the statistics literature, naive Bayes models are known under a variety of names, including simple Bayes and independence Bayes. All these names reference the use of Bayes' theorem in the classifier's decision rule, but naive Bayes is not (necessarily) a Bayesian method. Introduc ...
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Naive Bayes
In statistics, naive Bayes classifiers are a family of simple " probabilistic classifiers" based on applying Bayes' theorem with strong (naive) independence assumptions between the features (see Bayes classifier). They are among the simplest Bayesian network models, but coupled with kernel density estimation, they can achieve high accuracy levels. Naive Bayes classifiers are highly scalable, requiring a number of parameters linear in the number of variables (features/predictors) in a learning problem. Maximum-likelihood training can be done by evaluating a closed-form expression, which takes linear time, rather than by expensive iterative approximation as used for many other types of classifiers. In the statistics literature, naive Bayes models are known under a variety of names, including simple Bayes and independence Bayes. All these names reference the use of Bayes' theorem in the classifier's decision rule, but naive Bayes is not (necessarily) a Bayesian method. Introductio ...
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Binary Data
Binary data is data whose unit can take on only two possible states. These are often labelled as 0 and 1 in accordance with the binary numeral system and Boolean algebra. Binary data occurs in many different technical and scientific fields, where it can be called by different names including '' bit'' (binary digit) in computer science, ''truth value'' in mathematical logic and related domains and '' binary variable'' in statistics. Mathematical and combinatoric foundations A discrete variable that can take only one state contains zero information, and is the next natural number after 1. That is why the bit, a variable with only two possible values, is a standard primary unit of information. A collection of bits may have states: see binary number for details. Number of states of a collection of discrete variables depends exponentially on the number of variables, and only as a power law on number of states of each variable. Ten bits have more () states than three decimal dig ...
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